PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 281aa    MW: 32210 Da    PI: 5.0558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767002.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.72.6e-5471331129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL kkv++ ++++ +++++vd++++ePwdLp k++ +e+ewyfFs  d+ky+tg r+nrat++gyWk+tgkdke+++ 
  XP_009767002.1   7 LPPGFRFHPTDEELITCYLSKKVSDFRFTA-TAFSDVDLNNCEPWDLPGKASMGEEEWYFFSLIDRKYPTGFRTNRATEAGYWKTTGKDKEIFQ- 99 
                     79*************************999.88***************9889999***************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g ++g+kktLvfy+grapkgekt+W+mheyrle
  XP_009767002.1 100 GGVVIGMKKTLVFYRGRAPKGEKTNWIMHEYRLE 133
                     ********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-634153IPR003441NAC domain
PROSITE profilePS5100558.5587153IPR003441NAC domain
PfamPF023655.6E-288132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEEINNLPPG FRFHPTDEEL ITCYLSKKVS DFRFTATAFS DVDLNNCEPW DLPGKASMGE  60
EEWYFFSLID RKYPTGFRTN RATEAGYWKT TGKDKEIFQG GVVIGMKKTL VFYRGRAPKG  120
EKTNWIMHEY RLETNLAFKP SKEEWVVCRV FQKRSTMKKA QPTSSSQQSL ESPNCDTNCT  180
IAKEIIGDFE LPNLISIDTP SNYGINKISL HNYNNENMNM DFSAATRSEG ASNINVPFLP  240
NWSNLSSSVN SLFENDFTLN HSVQQQQAQD QSYWTIIFGE D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-55615916171NO APICAL MERISTEM PROTEIN
1ut4_B8e-55615916171NO APICAL MERISTEM PROTEIN
1ut7_A8e-55615916171NO APICAL MERISTEM PROTEIN
1ut7_B8e-55615916171NO APICAL MERISTEM PROTEIN
3swm_A8e-55615919174NAC domain-containing protein 19
3swm_B8e-55615919174NAC domain-containing protein 19
3swm_C8e-55615919174NAC domain-containing protein 19
3swm_D8e-55615919174NAC domain-containing protein 19
3swp_A8e-55615919174NAC domain-containing protein 19
3swp_B8e-55615919174NAC domain-containing protein 19
3swp_C8e-55615919174NAC domain-containing protein 19
3swp_D8e-55615919174NAC domain-containing protein 19
4dul_A8e-55615916171NAC domain-containing protein 19
4dul_B8e-55615916171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767002.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FK442e-80NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A1U7VG000.0A0A1U7VG00_NICSY; NAC domain-containing protein 100
STRINGXP_009767002.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-95NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]