PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766989.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 463aa    MW: 50182.9 Da    PI: 8.3563
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-40170247178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC+ dls+akey+r+h+vC+ hsk+p+v+++g+ +rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  XP_009766989.1 170 RCQVEGCSLDLSSAKEYYRKHRVCDSHSKCPKVIIAGVARRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 247
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-32164232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.111168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-37169250IPR004333Transcription factor, SBP-box
PfamPF031108.0E-31171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEWNAKWDWG NLVMFGSEAA KSPKELQLTD WGVEEDGELD AGSFNLSSGG SGSGSGTGGY  60
VSDVGHGSSI KSSISASTDS SPKEGLKACN FSFDGSSEDL SKKVKLCSRN SPPMEASVGS  120
VEPLIGLKLG KRTFETIGGA KVSSFPEKHV SSAAAAKKTK SSTQNAPTPR CQVEGCSLDL  180
SSAKEYYRKH RVCDSHSKCP KVIIAGVARR FCQQCSRFHS LSEFDEKKRS CRRRLSDHNA  240
RRRKPQQETI QFNSARLSSL FYDSRQPMNL VLNHSQLVQS RAAANSTWES TEETKFSITR  300
GSTPKPERAG STNGLSLLPG IQLSRAVGAH SNVSSCLLLP SKGHTSEVFN RGATESMFNM  360
GTGREFPRAL SLLSTNSWGS SEPETVSLNN PTHANQSSMP EQMMQAIPQG VPLMSCEYWQ  420
GEQPSSDPRD HTLAANSHAG GSFQGIELFK PPFDTDFYLN ALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-261712441184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0727210.0LC072721.1 Nicotiana tabacum NtabSPL2 mRNA for squamosa promoter binding protein spl2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766987.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_009766988.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_009766989.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLA0A1U7VKV90.0A0A1U7VKV9_NICSY; squamosa promoter-binding-like protein 12
STRINGXP_009766987.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-57squamosa promoter binding protein-like 2