PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 276aa    MW: 31677.4 Da    PI: 6.0407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766820.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.7e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed +l++ +   G  +Wk +++  g+ R++k+c++rw +yl
   XP_009766820.1 14 RGPWTIDEDHKLLNFILNNGIQCWKMVPKFAGLQRCGKSCRLRWINYL 61
                     89********************************************97 PP

2Myb_DNA-binding491.4e-1568110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       + ++ E+ +++++++ +G++ W++Ia++++ gRt++++k++w++
   XP_009766820.1  68 EPLSEAEENQIIQLHASFGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      677999***************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-20564IPR009057Homeodomain-like
PROSITE profilePS5129414.474961IPR017930Myb domain
SuperFamilySSF466896.36E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-51363IPR001005SANT/Myb domain
PfamPF002499.0E-111461IPR001005SANT/Myb domain
CDDcd001675.36E-51661No hitNo description
PROSITE profilePS5129425.80362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2465116IPR009057Homeodomain-like
SMARTSM007171.4E-1566114IPR001005SANT/Myb domain
PfamPF002493.2E-1468110IPR001005SANT/Myb domain
CDDcd001671.72E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTID EDHKLLNFIL NNGIQCWKMV PKFAGLQRCG KSCRLRWINY  60
LRPDLKREPL SEAEENQIIQ LHASFGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG  120
IDPLTHNPIK PINLENLEQK PDEMITQSNM QTHDHETMNS STSSKTKKTE TDIKIDDITN  180
DFSVVENECS NLCGNLDVDL LSNTTETVSY SLETAESINL SSASVATESS SNVVPAEGQD  240
SMQQWFYSVD SLFSWDNNVN QHGVGEDFFF WRNYNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766820.10.0PREDICTED: myb-related protein 315-like
RefseqXP_016449259.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A1S3YAX60.0A0A1S3YAX6_TOBAC; myb-related protein 315-like
TrEMBLA0A1U7VXV50.0A0A1U7VXV5_NICSY; myb-related protein 315-like
STRINGXP_009766820.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-76myb domain protein 40