PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766554.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 212aa    MW: 23517.6 Da    PI: 5.8907
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++ +lC+ C ++ H
  XP_009766554.1  4 LCDVCESAAAILFCAADEACLCRACDEKVH 33
                    7**************************998 PP
2zf-B_box25.72.4e-085291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_009766554.1 52 KIQRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                    6689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.84147IPR000315B-box-type zinc finger
CDDcd000211.70E-7345No hitNo description
PfamPF006435.8E-6341IPR000315B-box-type zinc finger
SMARTSM003363.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2145196IPR000315B-box-type zinc finger
PfamPF006434.6E-65285IPR000315B-box-type zinc finger
CDDcd000211.26E-65584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EACLCRACDE KVHMCNKLAS RHVRVGLADP SKIQRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR IEFPGDKLGP SNELGLPSTE  120
QGDVRREPAQ PFTLPMIENH QSNRETAKAG LENNVNSSVK MENELIDLNS RPQRMHGQSS  180
NNQEQGMDML SGSNHESVSV VPDGPFKREP EK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2396508e-80AC239650.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence.
GenBankHG9755138e-80HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766554.11e-157PREDICTED: zinc finger protein CONSTANS-LIKE 1-like isoform X1
RefseqXP_016446351.11e-157PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM51e-82BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1S3Y2J71e-156A0A1S3Y2J7_TOBAC; B-box zinc finger protein 19-like isoform X1
TrEMBLA0A1U7VVW91e-156A0A1U7VVW9_NICSY; zinc finger protein CONSTANS-LIKE 1-like isoform X1
STRINGXP_009766554.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-85DBB family protein