PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009766553.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 181aa MW: 21228.8 Da PI: 7.8544 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.3 | 6.6e-19 | 10 | 147 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.........kvkaeekew.yfFskrdkkyatgkrknr.atksgyWkat 86 +rF+Ptd+e + + L + +++++++ + + +++d+y ePw++ + +a+++++ yf +k +kk++ nr + ++g Wk++ XP_009766553.1 10 YRFRPTDSERL-KLLLRYIAKQEMNDSGFiTTNIDVYGGeEPWEIYNhgvpcgnddD-NADSSNYrYFITKLKKKSKA--GYNReVGNKGSWKQQ 100 49********9.7788888888877777735566**98659****744677665431.22223332666665555543..445547889****** PP NAM 87 gkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k k+v+ + + ++g+kk+L + +++ + + +W+m+ey+l XP_009766553.1 101 DKAKSVHYEnvgnsSLVVIGCKKSLCYVNKEYYNQNDGHWLMKEYEL 147 ******998665433444************999*9**********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.173 | 6 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-12 | 10 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-17 | 10 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MEQQLQEGFY RFRPTDSERL KLLLRYIAKQ EMNDSGFITT NIDVYGGEEP WEIYNHGVPC 60 GNDDDNADSS NYRYFITKLK KKSKAGYNRE VGNKGSWKQQ DKAKSVHYEN VGNSSLVVIG 120 CKKSLCYVNK EYYNQNDGHW LMKEYELSSV ILQKFDEDRR DYVLCAIKRM PHSTDYARCL 180 N |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766553.1 | 1e-135 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | A0A1U7VJP9 | 1e-133 | A0A1U7VJP9_NICSY; NAC domain-containing protein 78-like | ||||
STRING | XP_009766553.1 | 1e-134 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-09 | NAC domain containing protein 2 |