PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009766436.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 910aa MW: 101222 Da PI: 6.9154

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009766436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.2e-29	591	641	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_009766436.1 591 EKSISLQVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 641 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	7.4E-4	184	267	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.393	580	661	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-24	594	641	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.67E-23	803	898	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-20	812	892	No hit	No description
PROSITE profile	PS51745	21.272	813	895	IPR000270	PB1 domain
Pfam	PF00564	4.8E-18	813	894	IPR000270	PB1 domain
SMART	SM00666	9.6E-24	813	895	IPR000270	PB1 domain
CDD	cd06407	2.65E-37	814	894	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MEDGPFTLHD MFAKLSSDNT ISTSDFSEFL SDGFWLETTN HASNFLIPSS LASQPLLLDT 60 TNAGHSLPTA NQEETDKDKI LFAQMDDFSP TRRENSETSP RRLWIGPNIN PNPTLSVKKR 120 LVQAIEHLKD STRDKDVLIQ IWVPVKRGDK HVLITNNQPY FLNPNFQSLV EYRYVSQNYQ 180 FAAEKDSNEL VGLPGRVFLK KLPEWTPDVR FFKREEYPRV NHAHQYNVRG SIAVPVFETG 240 SGTCLGVVEI VTTTQKTHYH PELEDVCKAL EAVNLRSSGI SNPAKIKDCN ESYLAALAEI 300 QYILTCVCDT HKLPLAQTWA PCIQQGKGGC LQSDENSASC VTTVDEACYV RDPQVLPFHY 360 ACSEHHLLKG EGVAGGAFNT NQPCFATDIT AFSKTEYPLS HHARMFGLCS AVAIRLRSIY 420 TGSADFVLEF FLPLDCKNTE DQKQMLSSLS SVIQQSCRSL RVVTDQELLE EKELLQREKV 480 SLSAGESHEE VSRKPVSPPY RDEDASSWLS QMTDVQRKGK GAAISQEENF KVTANRWRES 540 IHASTYSEPN QIQDNFGPKG GYGGSLDFSS GTGSHSSGAK RAGERKRSKT EKSISLQVLR 600 QYFAGSLKDA AKNIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLQKLQL VIDSVHGAEG 660 AIKLSSFYTN FPELTSPNNP GTSNLSASKN HDHLQQVNTQ PDGSTLSPDT TTSKSTSSSG 720 SHNSSSSLFC STGSKHLFPL TNVFSTENAT MEEHPGGMLK RAHTEAELHD GGQEETKLLV 780 RSQSQKIQSN HNSLEPLCPL PTSSNQVIRD SATFKVKATF GKEKIRFSLQ SHWGFIDVLQ 840 EVLRRFNIED GKIDLKYLDD DDEWVLLTCD ADLEECVDIH RLCKRKTIKV SLHHAYHPNL 900 GSSFGSSGPA

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MEDGPFTLHD MFAKLSSDNT ISTSDFSEFL SDGFWLETTN HASNFLIPSS LASQPLLLDT  60
TNAGHSLPTA NQEETDKDKI LFAQMDDFSP TRRENSETSP RRLWIGPNIN PNPTLSVKKR  120
LVQAIEHLKD STRDKDVLIQ IWVPVKRGDK HVLITNNQPY FLNPNFQSLV EYRYVSQNYQ  180
FAAEKDSNEL VGLPGRVFLK KLPEWTPDVR FFKREEYPRV NHAHQYNVRG SIAVPVFETG  240
SGTCLGVVEI VTTTQKTHYH PELEDVCKAL EAVNLRSSGI SNPAKIKDCN ESYLAALAEI  300
QYILTCVCDT HKLPLAQTWA PCIQQGKGGC LQSDENSASC VTTVDEACYV RDPQVLPFHY  360
ACSEHHLLKG EGVAGGAFNT NQPCFATDIT AFSKTEYPLS HHARMFGLCS AVAIRLRSIY  420
TGSADFVLEF FLPLDCKNTE DQKQMLSSLS SVIQQSCRSL RVVTDQELLE EKELLQREKV  480
SLSAGESHEE VSRKPVSPPY RDEDASSWLS QMTDVQRKGK GAAISQEENF KVTANRWRES  540
IHASTYSEPN QIQDNFGPKG GYGGSLDFSS GTGSHSSGAK RAGERKRSKT EKSISLQVLR  600
QYFAGSLKDA AKNIGVCPTT LKRICRQHGI TRWPSRKIKK VGHSLQKLQL VIDSVHGAEG  660
AIKLSSFYTN FPELTSPNNP GTSNLSASKN HDHLQQVNTQ PDGSTLSPDT TTSKSTSSSG  720
SHNSSSSLFC STGSKHLFPL TNVFSTENAT MEEHPGGMLK RAHTEAELHD GGQEETKLLV  780
RSQSQKIQSN HNSLEPLCPL PTSSNQVIRD SATFKVKATF GKEKIRFSLQ SHWGFIDVLQ  840
EVLRRFNIED GKIDLKYLDD DDEWVLLTCD ADLEECVDIH RLCKRKTIKV SLHHAYHPNL  900
GSSFGSSGPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	880	889	RLCKRKTIKV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240198	0.0	AC240198.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-219g5 map 1, complete sequence.
GenBank	AC246586	0.0	AC246586.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-20o20 map 1, complete sequence.
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766436.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_009766437.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_009766438.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A1U7VNA3	0.0	A0A1U7VNA3_NICSY; protein NLP2-like
STRING	XP_009766436.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein