PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009766348.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 233aa MW: 26201.6 Da PI: 9.4705

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009766348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.5	1.5e-13	53	97	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++++ + +G+g W++I++ + Rt+ q+ s+ qky XP_009766348.1 53 AWTEDEQRLFLKGLEIHGKGKWAKISKDLLPSRTPTQIASHAQKY 97 6*************************999***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.174	46	102	IPR017930	Myb domain
SuperFamily	SSF46689	9.72E-15	48	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-12	49	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-13	49	100	IPR006447	Myb domain, plants
SMART	SM00717	1.9E-11	50	100	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-12	53	97	IPR001005	SANT/Myb domain
CDD	cd00167	1.13E-11	53	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGRKCTLCGR NGHNYRTCSE KSKTIKLFGV KISTSSSAIC KKDNGRKIKK GIAWTEDEQR 60 LFLKGLEIHG KGKWAKISKD LLPSRTPTQI ASHAQKYFMR LEYASNDRKS RKKPSVFDVH 120 LQKTQESMNL EEISEETIVS EHDIKIVPLE NQDQETANSQ VVTPIATSQS IPNYYNVLPI 180 TWVHHMYDYP AFYASGIDSV ASTSASGTMD QRLSGVSSHW SQSSKDNLDL TLA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766348.1	1e-176	PREDICTED: transcription factor MYB1R1-like
Refseq	XP_016461851.1	1e-176	PREDICTED: transcription factor MYB1R1-like
TrEMBL	A0A1S3ZBR5	1e-174	A0A1S3ZBR5_TOBAC; transcription factor MYB1R1-like
TrEMBL	A0A1U7VJ54	1e-174	A0A1U7VJ54_NICSY; transcription factor MYB1R1-like
STRING	XP_009766348.1	1e-175	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7454	12	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	6e-31	MYB_related family protein