PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766312.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 484aa    MW: 52285.8 Da    PI: 6.6529
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766312.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR25.92e-0830551642
             TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                    +YCeCfa+g +C+  C+C +C+N+ e+
  XP_009766312.1 30 RYCECFASGIYCDG-CNCANCHNNVEN 55
                    7*************.********9875 PP
2TCR51.32.4e-16100139140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_009766312.1 100 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 139
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.19120140IPR005172CRC domain
SMARTSM011140.00212955IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.8E-63052IPR005172CRC domain
SMARTSM011148.4E-20100141IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.9E-13103138IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MFEVHPLPLA YGGSIFAVSV ATMTSLSETR YCECFASGIY CDGCNCANCH NNVENEPARR  60
EAVEATLERN PHAFRPKIAS SPHGVRENRE EAGDGLVLPK HNKGCHCKKS GCLKKYCECF  120
QANILCSENC KCMDCKNFEG SQERQALFHG DHANNMAYLQ QAANAAITGA IGSSGYGSPP  180
VNKKRKAHEL FFGSMIKDPV YRLGQLQQES QIKASVSPSS LSSIPGPRFG NAAALGPSKF  240
TYRSLLADLI HPHDIKELCS VLVDYAWEAG KMLADEKDAS LKQAKCHSEA SYPSSGVEKV  300
IPDDCSSAFQ AENMDESSLD SANVPKERPM SPGTLALMCD EQNTIFTVAA APPNDPTSLS  360
NNTSSQLPHG QAMKEVYPEL EKIVLTRTRD CLKKLITLGE LKETKCSSMV RGADSGSQNE  420
VNGNGIAMTD SRNQHEPFRN GVANTVPTPP PPPQKVEPGT TAFNNNPCPK VHPSDGNGDV  480
ISKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-262514919132Protein lin-54 homolog
5fd3_B6e-262514919132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766312.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3
SwissprotQ9SZD11e-146TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7VE330.0A0A1U7VE33_NICSY; protein tesmin/TSO1-like CXC 5 isoform X3
STRINGXP_009766310.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-147Tesmin/TSO1-like CXC domain-containing protein