PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766310.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 608aa    MW: 65869.5 Da    PI: 8.0151
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.21.9e-14140179242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     + k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  XP_009766310.1 140 KPKQCNCKHSRCLKLYCECFASGIYCDG-CNCANCHNNVEN 179
                     5699************************.********9875 PP
2TCR50.93.2e-16224263140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  XP_009766310.1 224 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 263
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-15139179IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.463140264IPR005172CRC domain
PfamPF036381.3E-11142176IPR005172CRC domain
SMARTSM011148.4E-20224265IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12227262IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MEKIEGGDFP PKKAQSEPAA TAASAHVVTD YPAKKLARQL DFAGFGGAAA ADLPEQAKQV  60
QQQVMKSGQL PVSMKPTQMT RPQLQTQALP QSQQQHILLM PMQQTPVQPT HPSIRPVKPE  120
SPKARSRQSA NEAKDGTPKK PKQCNCKHSR CLKLYCECFA SGIYCDGCNC ANCHNNVENE  180
PARREAVEAT LERNPHAFRP KIASSPHGVR ENREEAGDGL VLPKHNKGCH CKKSGCLKKY  240
CECFQANILC SENCKCMDCK NFEGSQERQA LFHGDHANNM AYLQQAANAA ITGAIGSSGY  300
GSPPVNKKRK AHELFFGSMI KDPVYRLGQL QQESQIKASV SPSSLSSIPG PRFGNAAALG  360
PSKFTYRSLL ADLIHPHDIK ELCSVLVDYA WEAGKMLADE KDASLKQAKC HSEASYPSSG  420
VEKVIPDDCS SAFQAENMDE SSLDSANVPK ERPMSPGTLA LMCDEQNTIF TVAAAPPNDP  480
TSLSNNTSSQ LPHGQAMKEV YPELEKIVLT RTRDCLKKLI TLGELKETKC SSMVRGADSG  540
SQNEVNGNGI AMTDSRNQHE PFRNGVANTV PTPPPPPQKV EPGTTAFNNN PCPKVHPSDG  600
NGDVISKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3113827310132Protein lin-54 homolog
5fd3_B2e-3113827310132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766310.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-175TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7VWI30.0A0A1U7VWI3_NICSY; protein tesmin/TSO1-like CXC 5 isoform X1
STRINGXP_009766310.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-172Tesmin/TSO1-like CXC domain-containing protein