PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766292.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 313aa    MW: 35166 Da    PI: 7.0387
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.74.8e-33186243259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fpr+YYrCt+++C+vkk+vers edp++v++tYeg+Hnh+
  XP_009766292.1 186 EDGYRWRKYGQKAVKNSPFPRNYYRCTTQKCNVKKRVERSYEDPSIVITTYEGQHNHH 243
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-34170245IPR003657WRKY domain
SuperFamilySSF1182903.01E-29177245IPR003657WRKY domain
PROSITE profilePS5081131.651180245IPR003657WRKY domain
SMARTSM007741.2E-38185244IPR003657WRKY domain
PfamPF031065.8E-26186243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSNNPFYHDY MGTEGINTFP FFGENSSNYN HPPPNHIQNP HQQFVPSSYM TLTECLHSSM  60
DYNTLSSAFG MSCSSSEVVC PQIDRQDYSS RKSSVVSPAE LVLDSPLEGT SVEIPPTTNS  120
SISSTSNEAG GEEDSSKSKK LMQGKGCQEE GDGMSKKESK AKTKGEKKPK EPRFAFMTKS  180
EIDNLEDGYR WRKYGQKAVK NSPFPRNYYR CTTQKCNVKK RVERSYEDPS IVITTYEGQH  240
NHHCPATLRG NAASMLSPSF LSSSQLMPNF PPEIFAQMLN PTSNQNLLIN SPYNYHQHQG  300
QEYGSWFPKP EPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-261782461078Probable WRKY transcription factor 4
2lex_A6e-261782461078Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766292.10.0PREDICTED: probable WRKY transcription factor 71
RefseqXP_016432826.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ8VWJ23e-55WRK28_ARATH; WRKY transcription factor 28
TrEMBLA0A1S3WZ640.0A0A1S3WZ64_TOBAC; probable WRKY transcription factor 71
TrEMBLA0A1U7VE170.0A0A1U7VE17_NICSY; probable WRKY transcription factor 71
STRINGXP_009766292.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.16e-52WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]