PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766178.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 341aa    MW: 37686.6 Da    PI: 8.1336
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-17182236256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_009766178.1 182 RKKLRLTKEQSAFLEESFKEHNTLNPKQKFALAKQLKLRPRQVEVWFQNRRARTK 236
                     788899***********************************************98 PP
2HD-ZIP_I/II125.42.5e-40182272192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eLr +lk
  XP_009766178.1 182 RKKLRLTKEQSAFLEESFKEHNTLNPKQKFALAKQLKLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCETLTEENRRLQKELQELR-ALK 272
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-16170232IPR009057Homeodomain-like
SuperFamilySSF466896.42E-18174239IPR009057Homeodomain-like
PROSITE profilePS5007116.503178238IPR001356Homeobox domain
SMARTSM003891.0E-13180242IPR001356Homeobox domain
PfamPF000465.4E-15182236IPR001356Homeobox domain
CDDcd000869.82E-15182239No hitNo description
PROSITE patternPS000270213236IPR017970Homeobox, conserved site
PfamPF021837.6E-10238272IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.0E-24238281IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELALSLGGD TQKSFSFLKK STNNSSSHEE LLTSSNKDLR FCMGLGKSNT THELDENNGG  60
RKILHLDLLP LSAVPLNQIM PSQIPFPWLS QNIAAEPGLT NGPAGKVLDM NRRPIVLEEE  120
AEEGADLSSP NSNSGVSSFQ MEFSSIYRNG NSRSLIGKRD HSEAGDTERG VSDEDENNGL  180
ARKKLRLTKE QSAFLEESFK EHNTLNPKQK FALAKQLKLR PRQVEVWFQN RRARTKLKQT  240
ELDCEYLKRC CETLTEENRR LQKELQELRA LKSSQPLYMQ LPATTLTMCP SCERVATTTA  300
AAVPTAAAAT SATATNTTLS LAKPNLFPFP PAQVHAPQAA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230238RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442862e-56AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence.
GenBankHG9754492e-56HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755222e-56HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766178.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X2
RefseqXP_016464966.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466654e-87HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3ZKR30.0A0A1S3ZKR3_TOBAC; homeobox-leucine zipper protein HOX11-like isoform X1
TrEMBLA0A1U7VIL10.0A0A1U7VIL1_NICSY; homeobox-leucine zipper protein HOX11-like isoform X2
STRINGXP_009766177.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-73homeobox from Arabidopsis thaliana