PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009766177.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 349aa    MW: 38672.8 Da    PI: 8.0015
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009766177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.8e-17190244256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_009766177.1 190 RKKLRLTKEQSAFLEESFKEHNTLNPKQKFALAKQLKLRPRQVEVWFQNRRARTK 244
                     788899***********************************************98 PP
2HD-ZIP_I/II125.42.6e-40190280192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eLr +lk
  XP_009766177.1 190 RKKLRLTKEQSAFLEESFKEHNTLNPKQKFALAKQLKLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCETLTEENRRLQKELQELR-ALK 280
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-16178240IPR009057Homeodomain-like
SuperFamilySSF466896.84E-18182247IPR009057Homeodomain-like
PROSITE profilePS5007116.503186246IPR001356Homeobox domain
SMARTSM003891.0E-13188250IPR001356Homeobox domain
CDDcd000868.02E-15190247No hitNo description
PfamPF000465.6E-15190244IPR001356Homeobox domain
PROSITE patternPS000270221244IPR017970Homeobox, conserved site
SMARTSM003403.0E-24246289IPR003106Leucine zipper, homeobox-associated
PfamPF021837.9E-10246280IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MELALSLGGD TQKSFSFLKK STNNSSSHEE LLTSSNKDLR FCMGLGKSNT THELDENNGG  60
RKILHLDLLP LSAVPLNQIM PSQIPFPWLS QNTFCCWFVL VAAEPGLTNG PAGKVLDMNR  120
RPIVLEEEAE EGADLSSPNS NSGVSSFQME FSSIYRNGNS RSLIGKRDHS EAGDTERGVS  180
DEDENNGLAR KKLRLTKEQS AFLEESFKEH NTLNPKQKFA LAKQLKLRPR QVEVWFQNRR  240
ARTKLKQTEL DCEYLKRCCE TLTEENRRLQ KELQELRALK SSQPLYMQLP ATTLTMCPSC  300
ERVATTTAAA VPTAAAATSA TATNTTLSLA KPNLFPFPPA QVHAPQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238246RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2442862e-56AC244286.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-20a14 map 10, complete sequence.
GenBankHG9754492e-56HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755222e-56HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766177.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466653e-85HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1U7VDP80.0A0A1U7VDP8_NICSY; homeobox-leucine zipper protein HOX11-like isoform X1
STRINGXP_009766177.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-72homeobox from Arabidopsis thaliana