PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009766016.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 679aa MW: 76429.1 Da PI: 6.7624

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009766016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	48.1	2.3e-15	492	535	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA++Lgv+ ++LKriCR yGI RWP XP_009766016.1 492 HNINLKKIEDRSSMTQDAAANDLGVGKSTLKRICRLYGITRWPP 535 79*****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.707	478	563	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-12	493	536	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.77E-12	594	676	No hit	No description
SMART	SM00666	1.7E-11	596	678	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.0E-13	596	677	No hit	No description
PROSITE profile	PS51745	18.034	596	678	IPR000270	PB1 domain
Pfam	PF00564	4.4E-12	600	677	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MVIKERVKIA LQHVEKLSCN YLIQYWASIV IDGQTFLTTS DQPFGLTRLE YGLCSYRKKC 60 LSHAIPVELK NGTQCENDLG PPGRVFKHRL PELCTDVKNY SQQEFPLRDD AVAWSIQWCY 120 TVPVFDPSRD TFVGVLELVT SHQTKEWIFG NSVLPIFKML QVVDLKSPDS YCPLDLKVLD 180 DRQCALGGLY KAIEVVCQKH QFLFAQIWVS VADSWCTGKV ITVRQRHIAI NDNQNLNLFK 240 YASGLQYILE GYGVVGRAFS SKSSCFCRDV TRLSIMEYPL VTCAREAGLT GCFAICLSAP 300 GNDDNVFILE FFLPPNELLR RNLQDFLKLV LGTVKQQLQH VKVAVGHDFG EMLPVEVIKI 360 SSDDELDSFD ICQTTKELQN AEPLPNGGEL MLLDTPNQQS FSSETNQQLS LDIDEINAER 420 DSIAVSEEQC NSAGSSTSAK TSQNKERKLQ LDLSTRQAKQ GANAGNKRKK GKRIFTSESE 480 IQKERERIEQ DHNINLKKIE DRSSMTQDAA ANDLGVGKST LKRICRLYGI TRWPPKNKEK 540 KTKCSHSRKM KSILPAEEDV NARTKFQQSS DSPNKEDTIN GAKVGAHVTE ILDGTAVITK 600 VNYGDRMLKL KLTSSSKMKD LEEEVVKRVE SSIESFDFTY VDKEGDTILI KCDEDLTECF 660 LHSRSSESAT VKMSITPKS

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MVIKERVKIA LQHVEKLSCN YLIQYWASIV IDGQTFLTTS DQPFGLTRLE YGLCSYRKKC  60
LSHAIPVELK NGTQCENDLG PPGRVFKHRL PELCTDVKNY SQQEFPLRDD AVAWSIQWCY  120
TVPVFDPSRD TFVGVLELVT SHQTKEWIFG NSVLPIFKML QVVDLKSPDS YCPLDLKVLD  180
DRQCALGGLY KAIEVVCQKH QFLFAQIWVS VADSWCTGKV ITVRQRHIAI NDNQNLNLFK  240
YASGLQYILE GYGVVGRAFS SKSSCFCRDV TRLSIMEYPL VTCAREAGLT GCFAICLSAP  300
GNDDNVFILE FFLPPNELLR RNLQDFLKLV LGTVKQQLQH VKVAVGHDFG EMLPVEVIKI  360
SSDDELDSFD ICQTTKELQN AEPLPNGGEL MLLDTPNQQS FSSETNQQLS LDIDEINAER  420
DSIAVSEEQC NSAGSSTSAK TSQNKERKLQ LDLSTRQAKQ GANAGNKRKK GKRIFTSESE  480
IQKERERIEQ DHNINLKKIE DRSSMTQDAA ANDLGVGKST LKRICRLYGI TRWPPKNKEK  540
KTKCSHSRKM KSILPAEEDV NARTKFQQSS DSPNKEDTIN GAKVGAHVTE ILDGTAVITK  600
VNYGDRMLKL KLTSSSKMKD LEEEVVKRVE SSIESFDFTY VDKEGDTILI KCDEDLTECF  660
LHSRSSESAT VKMSITPKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766016.1	0.0	PREDICTED: protein NLP7-like
TrEMBL	A0A1U7VM28	0.0	A0A1U7VM28_NICSY; protein NLP7-like
STRING	XP_009766016.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13034	4	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-56	Nin-like family protein