PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009766015.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 172aa MW: 18896.4 Da PI: 7.4681

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009766015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145	2.1e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv++pyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++la XP_009766015.1 13 PCAACKLLRRRCAQDCVFSPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDHLQTQLA 107 7********************************************************************************************** PP DUF260 96 llkee 100 +++e XP_009766015.1 108 IAQAE 112 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.88	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKESGRKQSA ASPCAACKLL RRRCAQDCVF SPYFPADEPQ KFASVHKVFG ASNVNKMLQE 60 LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID HLQTQLAIAQ AEVVHMRMRQ 120 FSSMSSGGGT AENSPENVSP SSRHTQTQPI MSLFTMDMVV DHANMGESLW SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-50	9	126	7	124	LOB family transfactor Ramosa2.1
5ly0_B	4e-50	9	126	7	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	1e-114	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766014.1	1e-127	PREDICTED: LOB domain-containing protein 4-like isoform X1
Refseq	XP_009766015.1	1e-127	PREDICTED: LOB domain-containing protein 4-like isoform X2
Swissprot	Q9SHE9	1e-77	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1U7VVP7	1e-126	A0A1U7VVP7_NICSY; LOB domain-containing protein 4-like isoform X1
STRING	XP_009766015.1	1e-127	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-80	LOB domain-containing protein 4