PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765939.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 344aa    MW: 39535.2 Da    PI: 8.3781
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.21.4e-38972483131
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...eaessss 80 
                      kkdrhski T++g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl ++k  ikel +               s ss sec   ++ ++s 
  XP_009765939.1  97 SKKDRHSKINTAKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLIKSKSDIKELSKGrlsklscttviganSESSTSECevvSEIDESP 191
                     69************************************************************99**********887555557775453333333 PP

             TCP  81 sasnsssg.........kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                     s+++   +         +++k++++++ks ++aa  + +akesr++ar+rarert+ k++
  XP_009765939.1 192 SNHK---AnakgnscnkEKEKKKKEKEKSVRRAAFYHPFAKESRKQARERARERTKLKKN 248
                     3332...23447778766666667888888999999*******************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-4297247IPR005333Transcription factor, TCP
PROSITE profilePS5136932.13598156IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.211229246IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MYNSSNYTYN YNPIFSSNIF NIPSPCMQYE HEFFFQYYHD QLQQNLDDTL AEISTETAII  60
NTADSNKDDA LISRNELEQE EGCENKKGKI SSNKRVSKKD RHSKINTAKG PRDRRIRLSI  120
DIARNFFNLQ DMLRFEKASK TLEWLLIKSK SDIKELSKGR LSKLSCTTVI GANSESSTSE  180
CEVVSEIDES PSNHKANAKG NSCNKEKEKK KKEKEKSVRR AAFYHPFAKE SRKQARERAR  240
ERTKLKKNFC KSHHLNLRSW NFSEGGEESA GYISMNLPCQ EMQAEIVEEL TSHNEKQLLL  300
GIKENIANDC NLVATGNWSP NAIFNYQQNA GIPHEHQITD IPFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4001032e-44JQ400103.1 Petunia x hybrida putative transcription factor (TCP4) gene, complete cds.
GenBankJQ4001072e-44JQ400107.1 Petunia x hybrida putative transcription factor (TCP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765929.10.0PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_009765933.10.0PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_009765939.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1U7VU610.0A0A1U7VU61_NICSY; transcription factor CYCLOIDEA-like
STRINGXP_009765929.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-24TCP family protein