PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009765656.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 396aa MW: 45033.9 Da PI: 6.2938 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98.9 | 3.4e-31 | 212 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+ LH+rFve+v++LGG++kAtPk+i++lm+ +gLt+ hvkSHLQkYR+ XP_009765656.1 212 KTRIRWTQHLHDRFVECVNRLGGADKATPKAIVKLMDSEGLTIFHVKSHLQKYRS 266 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-28 | 210 | 267 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-16 | 211 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-23 | 212 | 267 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 216 | 265 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.9E-21 | 296 | 343 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MSIQRAEQTH AYHNSEFATD CNLEFQQNID QQKSTSCLEF CFQPGTSAEN CCQQVSWPNT 60 DSTSRTIISR IGSPASAFFA TERLIQYEYQ DNSCQLSKYN DPQLPSYPQR DFPKISMPSF 120 IRSQLSSSQP LGAYGNPFSN LSEKERLAIL KSKLLEEFDT SNKQPSMPVF HGNQDYGLSN 180 NFSGFNLEHA RQQSESPSPN NVNNSGGSLS NKTRIRWTQH LHDRFVECVN RLGGADKATP 240 KAIVKLMDSE GLTIFHVKSH LQKYRSAKYI PESAEGKSEK IDSPNNVTQI NSKTGMQIKE 300 ALNMQLEVQR RLHEQLEIQR KLQMRIEEQG EQLKKMFDQQ QKTTRSLLET RNSSITSPVD 360 SFTPHEEEDE VHVADSFDNT NFSSKITYDD MANASI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-22 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-22 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-22 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-22 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-22 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-22 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-22 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-22 | 212 | 269 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765656.1 | 0.0 | PREDICTED: uncharacterized protein LOC104217181 isoform X2 | ||||
TrEMBL | A0A1U7VL19 | 0.0 | A0A1U7VL19_NICSY; uncharacterized protein LOC104217181 isoform X2 | ||||
STRING | XP_009765655.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 3e-67 | G2-like family protein |