PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765569.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 395aa    MW: 43212.9 Da    PI: 7.7974
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-174695255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  XP_009765569.1 46 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 95
                    69*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.08946103IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2146103IPR016177DNA-binding domain
PfamPF008479.8E-114695IPR001471AP2/ERF domain
SMARTSM003801.3E-3346109IPR001471AP2/ERF domain
CDDcd000185.74E-3046102No hitNo description
Gene3DG3DSA:3.30.730.104.9E-2946102IPR001471AP2/ERF domain
PRINTSPR003672.3E-94758IPR001471AP2/ERF domain
PRINTSPR003672.3E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MEDAMRRLNQ ESDLPLQTTT CTTKRSCGAN KRSLNDGGGS SVGAVRYRGV RRRPWGRYAA  60
EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGVKART NFVYPPPSPT QPTSTNDGLT  120
FLNIPNSFNY SCAKSFPYQA ALKDLSNRQF FHSSNYSPSY GSGIRGVNGT TVATATQKSN  180
DSLNMLLFRE LLSSNSSNTT SSLSSDTGFN NNMPLYEQLP LMFSRNNTSI GWNSSTSNLM  240
NHTSSSSTFL PTTSNAIIPS SSVMTLPKIE NVRSLNNNSP CIHDVSGMDF FPSEPSDSGL  300
LEEALNGFFP KPKPVKSEPF PSSTKGELSG VSNIPQQIND GLNSGFEFSQ TSSSFPMYHQ  360
DFAANLQVSS GDNMMGDIFQ YPDLLNIFAA KLQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2236102271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765569.10.0PREDICTED: ethylene-responsive transcription factor ABI4-like
TrEMBLA0A1U7VT610.0A0A1U7VT61_NICSY; ethylene-responsive transcription factor ABI4-like
STRINGXP_009765569.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-12DORNROSCHEN-like