PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765495.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 405aa    MW: 45959.5 Da    PI: 5.0093
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765495.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box301.1e-091760340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  XP_009765495.1 17 ARACDSCIRKRARWYCAADDAFLCQTCDSSVHSAnplarrHERV 60
                    578*****************************667888888876 PP
2CCT69.39.9e-24350393144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRYkeKr+tR+F+KkirYe+RK +Ae RpR+KGrFvk++
  XP_009765495.1 350 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEMRPRMKGRFVKRT 393
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-111562IPR000315B-box-type zinc finger
PROSITE profilePS5011911.0641562IPR000315B-box-type zinc finger
PfamPF006437.7E-81760IPR000315B-box-type zinc finger
CDDcd000212.71E-101862No hitNo description
PfamPF062034.6E-18350392IPR010402CCT domain
PROSITE profilePS5101715.854350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MTSSEKKLAN VVGAKTARAC DSCIRKRARW YCAADDAFLC QTCDSSVHSA NPLARRHERV  60
RLKTASLKSS DSENSASVPS WHRGFTRKAR TPRIGKNSGS IKNPIQLIVP EISSDENSQD  120
ENEEQLLYRV PIPDPFVADE YSKDQMKSDF NDDHMNKFHG MLNIPSEMEL AEFAADVESL  180
LGKGLDDEES FNYMELGLGF LEKHDDSMGC FLVDEKIKVE NEGEMEVVMD NTNYNQVDYS  240
DTFDLKFDCD SPVITLEEDD KGEAGEIIMQ DSTNDGLIGD SKNNKILLNL DYGGVLNAWA  300
DQRSPWTTGE RPQVDSNDCW PVCMGNCGQI HAYGDMEIMT GHGPMIDEGR EARVLRYKEK  360
RRTRLFSKKI RYEVRKLNAE MRPRMKGRFV KRTNFAPTPF PSLNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360376RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755167e-60HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765495.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
RefseqXP_016494942.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-96COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S4C1B70.0A0A1S4C1B7_TOBAC; zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A1U7VUA80.0A0A1U7VUA8_NICSY; zinc finger protein CONSTANS-LIKE 16-like
STRINGXP_009765495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-93B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]