PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009765376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 406aa MW: 44973.9 Da PI: 6.1462 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21 | 7e-07 | 13 | 54 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + + +C+ ++ +lC+ C +H H++ XP_009765376.1 13 RVCDTCRSAACTVYCRADSAYLCAGCDARIHAAnlvasrHER 54 79******99*********************65677777765 PP | |||||||
2 | zf-B_box | 28.9 | 2.3e-09 | 55 | 100 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp+ XP_009765376.1 55 VWVCEACERAPAAFLCKADAASLCASCDADIHSAnplarrHHRVPI 100 689*****************************66899999877775 PP | |||||||
3 | CCT | 69.7 | 7.3e-24 | 337 | 380 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_009765376.1 337 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 380 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.153 | 10 | 57 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.9E-9 | 10 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.48E-8 | 13 | 57 | No hit | No description |
PROSITE profile | PS50119 | 11.121 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.7E-7 | 54 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.06E-9 | 56 | 100 | No hit | No description |
SMART | SM00336 | 3.7E-9 | 58 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.638 | 337 | 379 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.3E-18 | 337 | 379 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MLKKENSSNN WARVCDTCRS AACTVYCRAD SAYLCAGCDA RIHAANLVAS RHERVWVCEA 60 CERAPAAFLC KADAASLCAS CDADIHSANP LARRHHRVPI IPIPGTLYGP PAVDTLGGGT 120 LMIGGPEGDA TEDDRFLSLT QGADDTTIDE EDEDEAASWL LLNPPVKNNN KNINNNNNNQ 180 SNYGMLFGGE VVDEYLDLAE YGGDSQFNDQ YSVNQQQQHY SVPQKNYGGD SVVPVQGGHG 240 KSMILYHQQQ QQHHQQQQQN HHLSFQLGME YDNSNTGYGY PASMSHSVSM SSMDVSVVPE 300 SALSETSNSH PRPPKGTIDL FSGPPIQMPT QLTPMDREAR VLRYREKKKN RKFEKTIRYA 360 SRKAYAETRP RIKGRFAKRT DVEAEVDQMF STQLIADSSY GIVPSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ686941 | 0.0 | JQ686941.1 Nicotiana tabacum cultivar SR1 constans (CO) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765376.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2 | ||||
Refseq | XP_016462705.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2-like | ||||
Swissprot | Q96502 | 1e-135 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A1S3ZE00 | 0.0 | A0A1S3ZE00_TOBAC; zinc finger protein CONSTANS-LIKE 2-like | ||||
TrEMBL | A0A1U7VK90 | 0.0 | A0A1U7VK90_NICSY; zinc finger protein CONSTANS-LIKE 2 | ||||
STRING | XP_009765376.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5248 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-104 | CONSTANS-like 2 |
Publications ? help Back to Top | |||
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