PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009765274.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 446aa MW: 48339.7 Da PI: 4.3306

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009765274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39	1.3e-12	357	381	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_009765274.1 357 CGSCRQLLTYPQGAKLVKCSCCQTV 381 ************************9 PP
2	zf-LSD1	44.2	3.2e-14	395	419	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_009765274.1 395 CGGCAVLLMYPYGAPSVRCSSCRHM 419 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.6E-16	354	384	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-10	357	381	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.8E-10	392	420	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-11	395	418	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE VVEDKDNGPP 120 PGWELTPQLQ PLQTSTPPSG TQQALLADTA MEKKGEVVED ENNGPPPGWQ LTPQLQPLQT 180 STPPSGTQQA LLADIKMEKK EEVAEDEDNG PPPGWQLIPQ LQPLQTSTPP LGTQQTLLAA 240 LAFVDVEMGS KQQCAVEKEG HPPGSSIPMA GHSSPPTPPP QSSSSVASSE MEMGSKQEGT 300 KNEEVRPPIE KQEGTKNEEV RPPIEKQPTS HLSRIKPTAP QSSLPATSSA EMGQMVCGSC 360 RQLLTYPQGA KLVKCSCCQT VNFVLEAHEV GQVKCGGCAV LLMYPYGAPS VRCSSCRHMT 420 KIGAHNRRPP LSVQQARRRH PSYQVH

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV  60
EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE VVEDKDNGPP  120
PGWELTPQLQ PLQTSTPPSG TQQALLADTA MEKKGEVVED ENNGPPPGWQ LTPQLQPLQT  180
STPPSGTQQA LLADIKMEKK EEVAEDEDNG PPPGWQLIPQ LQPLQTSTPP LGTQQTLLAA  240
LAFVDVEMGS KQQCAVEKEG HPPGSSIPMA GHSSPPTPPP QSSSSVASSE MEMGSKQEGT  300
KNEEVRPPIE KQEGTKNEEV RPPIEKQPTS HLSRIKPTAP QSSLPATSSA EMGQMVCGSC  360
RQLLTYPQGA KLVKCSCCQT VNFVLEAHEV GQVKCGGCAV LLMYPYGAPS VRCSSCRHMT  420
KIGAHNRRPP LSVQQARRRH PSYQVH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-45	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765274.1	0.0	PREDICTED: basic salivary proline-rich protein 2-like isoform X5
TrEMBL	A0A1U7VSC6	0.0	A0A1U7VSC6_NICSY; basic salivary proline-rich protein 2-like isoform X5
STRING	XP_009765270.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-35	lsd one like 2