PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009765271.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LSD | ||||||||
Protein Properties | Length: 490aa MW: 53171 Da PI: 4.2197 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.8 | 1.5e-12 | 401 | 425 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_009765271.1 401 CGSCRQLLTYPQGAKLVKCSCCQTV 425 ************************9 PP | |||||||
2 | zf-LSD1 | 44 | 3.6e-14 | 439 | 463 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_009765271.1 439 CGGCAVLLMYPYGAPSVRCSSCRHM 463 **********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.5E-16 | 398 | 428 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.9E-10 | 401 | 425 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.7E-10 | 436 | 464 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-11 | 439 | 462 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MEENLNNIEE EEEEDEGPPP GFDSLAHTTN DETDEDEGPP PGWPSNPQQQ NQQLLLTTDV 60 EMGSREHESE DDEDGPPPGW NAVIPQKDSP STLRGTAAVT CDIEMEKKEE IVEDEDNGPP 120 PGWELAPQLQ PLQTSTSPSG TLQTLLADIE MEKKEEVVED KDNGPPPGWE LTPQLQPLQT 180 STPPSGTQQA LLADTAMEKK GEVVEDENNG PPPGWQLTPQ LQPLQTSTPP SGTQQALLAD 240 IKMEKKEEVA EDEDNGPPPG WQLIPQLQPL QTSTPPLGTQ QTLLAAFVDV EMGSKQQCAV 300 EKEGHPPGSS IPMAGHSSPP TPPPQSSSSV ASSEMEMGSK QEGTKNEEVR PPIEKQEGTK 360 NEEVRPPIEK QPTSHLSRIK PTAPQSSLPA TSSAEMGQMV CGSCRQLLTY PQGAKLVKCS 420 CCQTVNFVLE AHEVGQVKCG GCAVLLMYPY GAPSVRCSSC RHMTKIGAHN RRPPLSVQQA 480 RRRHPSYQVH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-45 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765271.1 | 0.0 | PREDICTED: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X2 | ||||
TrEMBL | A0A1U7VK02 | 0.0 | A0A1U7VK02_NICSY; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X2 | ||||
STRING | XP_009765270.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 6e-35 | lsd one like 2 |