PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009765231.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 347aa    MW: 38694.1 Da    PI: 6.4024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009765231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68.2e-153683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_009765231.1 36 KGLWSPEEDEKLMHYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 83
                     678*******************************************97 PP
2Myb_DNA-binding51.72e-1689133147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E+el+++++ +lG++ W+ Ia +++ gRt++++k++w++ 
   XP_009765231.1  89 RGAFSPQEEELIIHLHSLLGNR-WSQIAGRLP-GRTDNEIKNFWNST 133
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5863183IPR017930Myb domain
SuperFamilySSF466892.81E-2834130IPR009057Homeodomain-like
SMARTSM007171.4E-103585IPR001005SANT/Myb domain
PfamPF002491.7E-133683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-233790IPR009057Homeodomain-like
CDDcd001679.81E-93983No hitNo description
PROSITE profilePS5129425.87784138IPR017930Myb domain
SMARTSM007177.8E-1688136IPR001005SANT/Myb domain
PfamPF002495.7E-1589133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-2691139IPR009057Homeodomain-like
CDDcd001676.35E-1191134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MRKPEFSSSS SGKNGTNSNN NNNNNNNNNA NVKLRKGLWS PEEDEKLMHY MLTNGQGCWS  60
DVARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAGRLPG  120
RTDNEIKNFW NSTLKKRLKN SSSSSTPSPN ASDSSSEPCK DLNMGVNQGF MSMEKHKLMA  180
MYMDSTSSSS SSMALNTIID PLPTLEHSLM NMPSRFGAPS YLTTQPCMAQ GGNVTNGSLF  240
YGNNHGIFGG NLGIEGEIYV PPLESVSIEY QNVEVGNIVE RRSQNNNPNN NMTNLTSHFN  300
SSSNIKVENF GGIGNYWEGD DLKVGEWDLE ELMKDVSPFP FLDFQIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-273113822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-136HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765231.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A1U7VJX70.0A0A1U7VJX7_NICSY; transcription factor MYB46-like
STRINGXP_009765231.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.17e-66myb domain protein 83