PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009765072.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 407aa MW: 46324.4 Da PI: 7.4481 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 434.1 | 1e-132 | 33 | 407 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r s+ + l+ps+ e++ s+ +++ +++v+P+++fs XP_009765072.1 33 RQLLISCAELISRSDFSAANRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRYISSATNFLTPSNVVESSndSALLQSSYLSLNQVTPFIRFS 127 89****************************************************999999999877765554224455555666*********** PP GRAS 95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrl 186 +ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R +pp+lRiTg g+ + ++l++tg+rLakfA++lg++f+f++l + ++ XP_009765072.1 128 QLTANQAILEAINDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQFHPLliTNNND 217 ************998799***********************9.999**********....***************************96433355 PP GRAS 187 edlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +d ++ +++ + p+E+la+n+v+ lhrll+++ +l+ +L+ +ks++Pkvv+++e+ea+hn++ Fl+rf+eal+yy+a+fdslea+lp+ XP_009765072.1 218 NDHDPsiiSSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRIKSMNPKVVTLAEREANHNHPLFLQRFVEALDYYAAVFDSLEATLPPS 308 555551115556777****************99999999....**************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsv 370 s+er++vE++++grei ++va+eg++rrerhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++ + s+s++lgW+++pL+s+ XP_009765072.1 309 SRERMTVEQVWFGREIIDIVAAEGDKRRERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLSvsSTSNSFFLGWQNQPLFSI 403 ************************************************************************98855779*************** PP GRAS 371 SaWr 374 S+Wr XP_009765072.1 404 SSWR 407 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.443 | 6 | 384 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-130 | 33 | 407 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010223 | Biological Process | secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MLGSFGSSSQ SHDEETDDQR RRFSSTSPAI QIRQLLISCA ELISRSDFSA ANRLLTILST 60 NSSPFGDSTE RLVHQFTRAL SLRLNRYISS ATNFLTPSNV VESSNDSALL QSSYLSLNQV 120 TPFIRFSQLT ANQAILEAIN DNQQAIHIVD FDINHGVQWP PLMQALADRY PPPTLRITGT 180 GNDLDTLRRT GDRLAKFAHS LGLRFQFHPL LITNNNDNDH DPSIISSIVL LPDETLAINC 240 VFYLHRLLKD REKLRIFLHR IKSMNPKVVT LAEREANHNH PLFLQRFVEA LDYYAAVFDS 300 LEATLPPSSR ERMTVEQVWF GREIIDIVAA EGDKRRERHE RFRSWEVMLR SCGFSNVALS 360 PFALSQAKLL LRLHYPSEGY QLSVSSTSNS FFLGWQNQPL FSISSWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-63 | 39 | 406 | 25 | 377 | Protein SCARECROW |
5b3h_D | 5e-63 | 39 | 406 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU935581 | 0.0 | EU935581.1 Nicotiana tabacum lateral suppressor protein (Ls) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765072.1 | 0.0 | PREDICTED: scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 1e-130 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A1S3XTB6 | 0.0 | A0A1S3XTB6_TOBAC; scarecrow-like protein 18 | ||||
TrEMBL | A0A1U7VAL7 | 0.0 | A0A1U7VAL7_NICSY; scarecrow-like protein 18 | ||||
STRING | XP_009765072.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11298 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-133 | GRAS family protein |
Publications ? help Back to Top | |||
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