PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009764982.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 651aa MW: 74131.6 Da PI: 5.4638 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.3 | 6e-23 | 125 | 225 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt+sd ++ l++ +k a+++ ++k +++l+++d++g++W++k+ ++++++r++lt+GW Fv +++L +gD vvF +++ XP_009764982.1 125 FCKALTTSDIKSNWGLSVHRKDANKCfppldmaQEK--PTQELIVNDLQGNEWRFKHVFQGQPRRHLLTNGWGAFVTSKKLLAGDLVVFL--RDE 215 99****************************964433..4459************************************************..569 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +++l+v+++r XP_009764982.1 216 TGKLHVGIRR 225 999*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-35 | 118 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.02E-27 | 120 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.59E-19 | 124 | 225 | No hit | No description |
PROSITE profile | PS50863 | 12.59 | 125 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-16 | 125 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.9E-20 | 125 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.3E-5 | 250 | 311 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MVDLLGSNSQ LKHFEGDNAL CREIWRACSG SLLDVPKLGE RVHYFPRIHM DQLEQSSNLE 60 WIQGLQLSHL PRKILCRVLH IRLLVEHDTE EVYAETILLP NQEQNEPSTP EFCPLEPPRP 120 QYQSFCKALT TSDIKSNWGL SVHRKDANKC FPPLDMAQEK PTQELIVNDL QGNEWRFKHV 180 FQGQPRRHLL TNGWGAFVTS KKLLAGDLVV FLRDETGKLH VGIRRLSYQC NSVGSSTFSR 240 QSMEGVLAVA SHAFATRSLF SVYYKPCHNR SSQFIMSLSN YFEGGNHGPG VGTISRTQQS 300 SLDSHVKRTS GMDQMSFPQG QHMTNLLLEE DQYMQDSEAI SISARPTMMP LEIEQQSVES 360 LNNIHHIEDN VLQPHTAVAR ENNEGFIPNE TVAIQAQDEN FDELFKETDF PDFVNTSLDT 420 ITLDWDSDLR STIQDFDEWL EEQEETNPPG LQTCSEDHSR QTSSILEQPT SSQVMSISST 480 PSRIPYKGPG RGDEQVPWGR YQVARRCLPI LNRVVSRYPD SLVNFKVASS IFQSLHLEIL 540 AELVYFLDNL TVMNLSKDQF NVAGQHLWDL KLSGIELGWL EKRLAHIDGA FSMENLLQRR 600 QAVTLRMGET LATFRQLDEE LGRINKELHE LSLKVGPNPP MRFHPVLEGL L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 7e-88 | 18 | 311 | 17 | 310 | Auxin response factor 1 |
4ldw_A | 7e-88 | 18 | 311 | 17 | 310 | Auxin response factor 1 |
4ldw_B | 7e-88 | 18 | 311 | 17 | 310 | Auxin response factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB084669 | 0.0 | AB084669.1 Nicotiana tabacum NtWAF mRNA for hypothetical protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764982.1 | 0.0 | PREDICTED: auxin response factor 17-like isoform X3 | ||||
Refseq | XP_016487498.1 | 0.0 | PREDICTED: auxin response factor 17-like isoform X3 | ||||
TrEMBL | A0A1S4BF96 | 0.0 | A0A1S4BF96_TOBAC; Auxin response factor | ||||
TrEMBL | A0A1U7VAC8 | 0.0 | A0A1U7VAC8_NICSY; Auxin response factor | ||||
STRING | XP_009612920.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.3 | 6e-92 | auxin response factor 11 |