PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764955.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 394aa    MW: 45239.4 Da    PI: 7.7189
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.9e-49401652128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eelv +yL++k+egk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++
  XP_009764955.1  40 MPGFRFHPTEEELVEFYLRRKIEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSES 133
                     79***************************.89***************888889****************************************99 PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +glkktLvfy+g+apkg +++W+m+eyrl
  XP_009764955.1 134 CRPIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 165
                     9*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.1239186IPR003441NAC domain
SuperFamilySSF1019411.96E-5539186IPR003441NAC domain
PfamPF023652.3E-2441165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAIAPFTSMS QSQQQQDDNS SNKRDHDHDA DDEHEHDMVM PGFRFHPTEE ELVEFYLRRK  60
IEGKRFNVEL ITFLDLYRYD PWELPAMAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW  120
KATGADRMIR SESCRPIGLK KTLVFYSGKA PKGIRSSWIM NEYRLPHHET ERLKKAEISL  180
CRVYKRPGVE DHPSLPRSLP TTMASSSSSS RAHHSIIKKH HHPQVVQDHP LLSPNYVGQS  240
NSQQIDEKLN ENSTASSTST DHHHHHRNVG TSLGLSSHQI TALTASTITP FSSLISPNNT  300
AVVDDLHRLV NFQNLHNHHQ HFQNFSNHNI PAASIATHQF STLLQPLLEP HQPQPNLLLQ  360
GSLQPSAFSE RLWDWNSVQT DASCKDYQPN NPFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-554118619165NO APICAL MERISTEM PROTEIN
1ut4_B3e-554118619165NO APICAL MERISTEM PROTEIN
1ut7_A3e-554118619165NO APICAL MERISTEM PROTEIN
1ut7_B3e-554118619165NO APICAL MERISTEM PROTEIN
3swm_A4e-554118622168NAC domain-containing protein 19
3swm_B4e-554118622168NAC domain-containing protein 19
3swm_C4e-554118622168NAC domain-containing protein 19
3swm_D4e-554118622168NAC domain-containing protein 19
3swp_A4e-554118622168NAC domain-containing protein 19
3swp_B4e-554118622168NAC domain-containing protein 19
3swp_C4e-554118622168NAC domain-containing protein 19
3swp_D4e-554118622168NAC domain-containing protein 19
4dul_A3e-554118619165NAC domain-containing protein 19
4dul_B3e-554118619165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764955.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9ZVP81e-118NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A1U7VSP60.0A0A1U7VSP6_NICSY; transcription factor JUNGBRUNNEN 1-like
STRINGXP_009764955.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-115NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]