PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764599.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 287aa    MW: 32157.7 Da    PI: 5.06
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.8e-31123179258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     dDgy+WrKYGqK++k+s++prsYY+Ct ++C +kk+vers+++p++++itYeg H h
  XP_009764599.1 123 DDGYKWRKYGQKSIKNSPYPRSYYKCTNPRCGAKKQVERSSDEPDTLVITYEGFHLH 179
                     8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-29117179IPR003657WRKY domain
PROSITE profilePS5081126.888117182IPR003657WRKY domain
SuperFamilySSF1182901.44E-26119179IPR003657WRKY domain
SMARTSM007744.1E-35122181IPR003657WRKY domain
PfamPF031061.4E-25123179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MATEELEELK NSWTYHDELI KELLDNESPF FLAPQDSNST SCPSSTDNSV VTKSFISAVS  60
SGPNMDDIES RLSVTSYGNP SHDVSYVRTF GLERGLNLMM SKQETNETKY TLRIKTCGNA  120
MADDGYKWRK YGQKSIKNSP YPRSYYKCTN PRCGAKKQVE RSSDEPDTLV ITYEGFHLHF  180
AYPFLTLDPT QFLEQPNKKP KLTNSKAHNE ESENASEVDE SPKCVNLSPV IDFEQKLGFG  240
GMGSQGLLED MVPLMVRNPS MKPTSSYSSS CSYSSPPTSP SFSWSNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-231211791674Probable WRKY transcription factor 4
2lex_A5e-231211791674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754482e-38HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755212e-38HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764599.10.0PREDICTED: probable WRKY transcription factor 49
RefseqXP_016450821.10.0PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A1S3YF120.0A0A1S3YF12_TOBAC; probable WRKY transcription factor 49
TrEMBLA0A1U7VQG90.0A0A1U7VQG9_NICSY; probable WRKY transcription factor 49
STRINGXP_009764599.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120752124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-50WRKY DNA-binding protein 49