PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009764333.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 267aa MW: 28205.6 Da PI: 4.5705

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009764333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.2	6.4e-16	102	149	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r +++g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g XP_009764333.1 102 FRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 149 89995..678*******843...5*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	3.0E-27	101	165	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.902	101	157	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-25	101	157	IPR001471	AP2/ERF domain
CDD	cd00018	1.23E-15	102	157	No hit	No description
Pfam	PF00847	3.1E-9	102	149	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.53E-17	102	158	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MADHPADDST KTSQKNQPPQ PSESSQTPFC PIPPPLLPPL PVEETNISPR PLISDIAILE 60 NTKSPPKTVQ LPNIIPTVTT TMSSTSSGGS PSRPTGGKHA VFRGIRSRSG KWVSEIREPR 120 KTTRIWLGTY PTPEMAAAAY DVAALALKGG DAVINFPGNL TSYPSLPPSP SPADIRKAAA 180 SAAALMKPQT GEGTMPTQPG NDDQSSGSAQ MISTDGGNEY IDEEALFDMP NLLVDMAEAM 240 MVSPPRMNSP PPSDSPGNSD AESLWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-14	92	157	5	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00558	DAP	Transfer from AT5G52020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764333.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF027-like
Swissprot	Q9FJ90	5e-51	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	A0A1U7VDB4	0.0	A0A1U7VDB4_NICSY; ethylene-responsive transcription factor ERF027-like
STRING	XP_009764333.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA553	22	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	3e-41	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]