PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009764262.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 229aa MW: 26350.7 Da PI: 8.6965

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009764262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.5e-32	150	208	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ XP_009764262.1 150 LDDGFKWRKYGQKAVKNSTHPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGIHNHP 208 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-32	137	208	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-28	142	209	IPR003657	WRKY domain
PROSITE profile	PS50811	28.116	145	210	IPR003657	WRKY domain
SMART	SM00774	5.9E-37	150	209	IPR003657	WRKY domain
Pfam	PF03106	2.6E-25	151	208	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MHYTSTSINA GEEPPPLPLP PPPLVSNDIS PANFFMQPNI SMLNNQSPLY NNSQVGCDNI 60 DWAALFSSST NNSIDAEYFM HRTAPVSNDT EPTTMPNVSI TPRNIMMEDE QQQQQQQQHG 120 GYCRDKGKFR KRKYVPPRIA FHTRSTEDIL DDGFKWRKYG QKAVKNSTHP RSYYRCTHHT 180 CNVKKQIQRL SKDTSIVVTT YEGIHNHPCE KLMETLSPIL KQLQFFARF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-24	138	207	2	71	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	6e-53	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764262.1	1e-174	PREDICTED: probable WRKY transcription factor 24
TrEMBL	A0A1U7V7Z2	1e-173	A0A1U7V7Z2_NICSY; probable WRKY transcription factor 24
STRING	XP_009764262.1	1e-174	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	6e-57	WRKY DNA-binding protein 56