PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009764158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 23792.6 Da PI: 4.4188 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1e-16 | 22 | 71 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r ++ +g+Wv+eIr+p++ ++r++lg+f t+e+Aa+a++ a+++l+g XP_009764158.1 22 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTPEMAAAAYDVAALALKG 71 68****9.55.6*********843...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-10 | 22 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.717 | 23 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 23 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-25 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-25 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.51E-14 | 24 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MADLSNIVVE NKQSPRTNTK HPVYRGIRCR SGKWVSEIRE PRKTTRIWLG TFPTPEMAAA 60 AYDVAALALK GSSNVVLNFP CHVNFYPQLP PSPSPADIQS AAAIAAALMK KEAGDGIVVA 120 QQGNDDKLSG NSGGATCNEG DSVGATCNEG DSIEYPSPES YNVQIGEKYV DEDDVFYMPN 180 LLVDMAEAMM MSPPRINSST WEEYSRGDPS YIENLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-13 | 17 | 84 | 8 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764158.1 | 1e-163 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
TrEMBL | A0A1U7VCQ2 | 1e-161 | A0A1U7VCQ2_NICSY; ethylene-responsive transcription factor ERF027-like | ||||
STRING | XP_009764158.1 | 1e-162 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 1e-29 | ERF family protein |