PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009764104.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 240aa MW: 26842.2 Da PI: 8.8643

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009764104.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.4e-30	167	224	1	58
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed+++v++tYe e + XP_009764104.1 167 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDTSIVVTTYEAEYIC 224 59***************************************************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-31	152	225	IPR003657	WRKY domain
SuperFamily	SSF118290	1.05E-25	159	225	IPR003657	WRKY domain
PROSITE profile	PS50811	27.129	162	222	IPR003657	WRKY domain
SMART	SM00774	9.1E-35	167	226	IPR003657	WRKY domain
Pfam	PF03106	2.6E-23	168	224	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MLLIKSMADK ENKLKPNTSS LEISTFSDQI PANNYSLSSI FDMPTCETEK GSSLSLIETM 60 FSSHPITTPS TFDLLQPPPP AVPLLVPSQI VNKIPSSEIV NTPNSSSISS SSTEAAANDD 120 QLQPNTQTVD DDDQHKNKKQ LKPKKKNQKR QREPRFAFMT KSEVDHLDDG FRWRKYGQKA 180 VKNSPFPRSY YRCTTATCGV KKRVERSSED TSIVVTTYEA EYICSRVAFS LSTLSMKSQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-24	160	222	10	72	Probable WRKY transcription factor 4
2lex_A	4e-24	160	222	10	72	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764102.1	1e-177	PREDICTED: probable WRKY transcription factor 23 isoform X3
Refseq	XP_009764103.1	1e-177	PREDICTED: probable WRKY transcription factor 23 isoform X3
Refseq	XP_009764104.1	1e-177	PREDICTED: probable WRKY transcription factor 23 isoform X3
TrEMBL	A0A1U7V7J4	1e-176	A0A1U7V7J4_NICSY; probable WRKY transcription factor 23 isoform X3
STRING	XP_009764098.1	1e-159	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	6e-40	WRKY DNA-binding protein 57