PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009764103.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 240aa    MW: 26842.2 Da    PI: 8.8643
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009764103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-30167224158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed+++v++tYe e  +
  XP_009764103.1 167 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDTSIVVTTYEAEYIC 224
                     59***************************************************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-31152225IPR003657WRKY domain
SuperFamilySSF1182901.05E-25159225IPR003657WRKY domain
PROSITE profilePS5081127.129162222IPR003657WRKY domain
SMARTSM007749.1E-35167226IPR003657WRKY domain
PfamPF031062.6E-23168224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLLIKSMADK ENKLKPNTSS LEISTFSDQI PANNYSLSSI FDMPTCETEK GSSLSLIETM  60
FSSHPITTPS TFDLLQPPPP AVPLLVPSQI VNKIPSSEIV NTPNSSSISS SSTEAAANDD  120
QLQPNTQTVD DDDQHKNKKQ LKPKKKNQKR QREPRFAFMT KSEVDHLDDG FRWRKYGQKA  180
VKNSPFPRSY YRCTTATCGV KKRVERSSED TSIVVTTYEA EYICSRVAFS LSTLSMKSQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-241602221072Probable WRKY transcription factor 4
2lex_A4e-241602221072Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764102.11e-177PREDICTED: probable WRKY transcription factor 23 isoform X3
RefseqXP_009764103.11e-177PREDICTED: probable WRKY transcription factor 23 isoform X3
RefseqXP_009764104.11e-177PREDICTED: probable WRKY transcription factor 23 isoform X3
TrEMBLA0A1U7V7J41e-176A0A1U7V7J4_NICSY; probable WRKY transcription factor 23 isoform X3
STRINGXP_009764098.11e-159(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.26e-40WRKY DNA-binding protein 57