PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009764082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 751aa MW: 84666.6 Da PI: 6.5666 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 392.8 | 3.8e-120 | 379 | 748 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++ L+ cA+av+++d + a+++L+++++++s+ gd mqRla+y++++L+ar+a+s++++y al + +ts +++l+a++lf ++P+ k+s++ XP_009764082.1 379 RTILTLCAQAVAADDRRTANEFLKQIRQNSSSMGDGMQRLAHYVANGLEARMAGSGTQIYTALISMPTS---AADVLKAYQLFLAACPFRKLSNF 470 67899**********************************************************999998...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef++ +ak++e++ XP_009764082.1 471 FSNKTIMNVAERAKTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGKRLANYAESFNVPFEFKA-IAKKWETI 564 ********************************************************9*****************************.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E+l+Vn+ ++ +llde+v ++s+rd vL+l++ l+P+v++ + +n++ F +rf eal +ys++fd+lea++pre +er+ XP_009764082.1 565 KVEDLEIRKDEVLVVNCLYRFRNLLDETVVVNSPRDIVLNLIRMLKPDVFIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPREIHERML 659 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ ++gre++nvvace aer+er et+++W+ r +aGF+++pl+e++ ++ak ++ +++d + ++ + ++l++gWk+r ++++S W+ XP_009764082.1 660 IEKIIFGREVMNVVACEAAERIERPETYKQWKVRNIRAGFRQLPLNEEIRSTAKERVKAYHKD-FVIDVDGHWLLQGWKGRIVYALSTWK 748 *************************************************************77.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.348 | 352 | 729 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-117 | 379 | 748 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MVMDKNYKGL YEATSAIQLK DEDLSFFPDL NLINNLRVSD HTLVQRNHVN IPQFQPDVLV 60 PSAVYNTHED YDFSDVVLTY ISQMLMEENI EEKACMFQES AALQAAERSF YEVIGKKYPP 120 SHNQEMPNLG QIDGRYPVDS SSSNYVDSSS SNYYSCISDV SDGLLCPNWN PDIGGDSDSS 180 HAQHFPVDGA VASTSQSSHS SPSSSGTVTD AHLDSPVSSI QIPDIFSDSE SIMQFKKGVE 240 EASKFLPTGN SLLLDVRFNV VGKEDNEYGK NAVVKVENWG KHQSPEGSRG KKNVHHDDVD 300 AMEERSNKQS AVFSESTVRS EMFDRVLLCS GGKNESALRE SWQTVSSKNT PEDGLPKGSN 360 GRKSRGKRQG SKRDTVDLRT ILTLCAQAVA ADDRRTANEF LKQIRQNSSS MGDGMQRLAH 420 YVANGLEARM AGSGTQIYTA LISMPTSAAD VLKAYQLFLA ACPFRKLSNF FSNKTIMNVA 480 ERAKTVHIID FGIMYGFQWP CFIQRLSSRP GGPPKLRITG IDFPNPGFRP AERVEETGKR 540 LANYAESFNV PFEFKAIAKK WETIKVEDLE IRKDEVLVVN CLYRFRNLLD ETVVVNSPRD 600 IVLNLIRMLK PDVFIQGIVN GAYNAPFFIT RFREALFHYS SVFDMLEANI PREIHERMLI 660 EKIIFGREVM NVVACEAAER IERPETYKQW KVRNIRAGFR QLPLNEEIRS TAKERVKAYH 720 KDFVIDVDGH WLLQGWKGRI VYALSTWKAA Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-55 | 362 | 747 | 3 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764081.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Refseq | XP_009764082.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1U7V7H1 | 0.0 | A0A1U7V7H1_NICSY; scarecrow-like protein 14 | ||||
STRING | XP_009764081.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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