PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009764081.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 751aa MW: 84666.6 Da PI: 6.5666

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009764081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	392.8	3.8e-120	379	748	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++ L+ cA+av+++d + a+++L+++++++s+ gd mqRla+y++++L+ar+a+s++++y al + +ts +++l+a++lf ++P+ k+s++ XP_009764081.1 379 RTILTLCAQAVAADDRRTANEFLKQIRQNSSSMGDGMQRLAHYVANGLEARMAGSGTQIYTALISMPTS---AADVLKAYQLFLAACPFRKLSNF 470 67899********************************************************999998...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef++ +ak++e++ XP_009764081.1 471 FSNKTIMNVAERAKTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGKRLANYAESFNVPFEFKA-IAKKWETI 564 ****************************************************9*************************.7*** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++e+L+++++E+l+Vn+ ++ +llde+v ++s+rd vL+l++ l+P+v++ + +n++ F +rf eal +ys++fd+lea++pre +er+ XP_009764081.1 565 KVEDLEIRKDEVLVVNCLYRFRNLLDETVVVNSPRDIVLNLIRMLKPDVFIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPREIHERML 659 ******************************************************************************************* PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+ ++gre++nvvace aer+er et+++W+ r +aGF+++pl+e++ ++ak ++ +++d + ++ + ++l++gWk+r ++++S W+ XP_009764081.1 660 IEKIIFGREVMNVVACEAAERIERPETYKQWKVRNIRAGFRQLPLNEEIRSTAKERVKAYHKD-FVIDVDGHWLLQGWKGRIVYALSTWK 748 *********************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.348	352	729	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-117	379	748	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MVMDKNYKGL YEATSAIQLK DEDLSFFPDL NLINNLRVSD HTLVQRNHVN IPQFQPDVLV 60 PSAVYNTHED YDFSDVVLTY ISQMLMEENI EEKACMFQES AALQAAERSF YEVIGKKYPP 120 SHNQEMPNLG QIDGRYPVDS SSSNYVDSSS SNYYSCISDV SDGLLCPNWN PDIGGDSDSS 180 HAQHFPVDGA VASTSQSSHS SPSSSGTVTD AHLDSPVSSI QIPDIFSDSE SIMQFKKGVE 240 EASKFLPTGN SLLLDVRFNV VGKEDNEYGK NAVVKVENWG KHQSPEGSRG KKNVHHDDVD 300 AMEERSNKQS AVFSESTVRS EMFDRVLLCS GGKNESALRE SWQTVSSKNT PEDGLPKGSN 360 GRKSRGKRQG SKRDTVDLRT ILTLCAQAVA ADDRRTANEF LKQIRQNSSS MGDGMQRLAH 420 YVANGLEARM AGSGTQIYTA LISMPTSAAD VLKAYQLFLA ACPFRKLSNF FSNKTIMNVA 480 ERAKTVHIID FGIMYGFQWP CFIQRLSSRP GGPPKLRITG IDFPNPGFRP AERVEETGKR 540 LANYAESFNV PFEFKAIAKK WETIKVEDLE IRKDEVLVVN CLYRFRNLLD ETVVVNSPRD 600 IVLNLIRMLK PDVFIQGIVN GAYNAPFFIT RFREALFHYS SVFDMLEANI PREIHERMLI 660 EKIIFGREVM NVVACEAAER IERPETYKQW KVRNIRAGFR QLPLNEEIRS TAKERVKAYH 720 KDFVIDVDGH WLLQGWKGRI VYALSTWKAA Y

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MVMDKNYKGL YEATSAIQLK DEDLSFFPDL NLINNLRVSD HTLVQRNHVN IPQFQPDVLV  60
PSAVYNTHED YDFSDVVLTY ISQMLMEENI EEKACMFQES AALQAAERSF YEVIGKKYPP  120
SHNQEMPNLG QIDGRYPVDS SSSNYVDSSS SNYYSCISDV SDGLLCPNWN PDIGGDSDSS  180
HAQHFPVDGA VASTSQSSHS SPSSSGTVTD AHLDSPVSSI QIPDIFSDSE SIMQFKKGVE  240
EASKFLPTGN SLLLDVRFNV VGKEDNEYGK NAVVKVENWG KHQSPEGSRG KKNVHHDDVD  300
AMEERSNKQS AVFSESTVRS EMFDRVLLCS GGKNESALRE SWQTVSSKNT PEDGLPKGSN  360
GRKSRGKRQG SKRDTVDLRT ILTLCAQAVA ADDRRTANEF LKQIRQNSSS MGDGMQRLAH  420
YVANGLEARM AGSGTQIYTA LISMPTSAAD VLKAYQLFLA ACPFRKLSNF FSNKTIMNVA  480
ERAKTVHIID FGIMYGFQWP CFIQRLSSRP GGPPKLRITG IDFPNPGFRP AERVEETGKR  540
LANYAESFNV PFEFKAIAKK WETIKVEDLE IRKDEVLVVN CLYRFRNLLD ETVVVNSPRD  600
IVLNLIRMLK PDVFIQGIVN GAYNAPFFIT RFREALFHYS SVFDMLEANI PREIHERMLI  660
EKIIFGREVM NVVACEAAER IERPETYKQW KVRNIRAGFR QLPLNEEIRS TAKERVKAYH  720
KDFVIDVDGH WLLQGWKGRI VYALSTWKAA Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-55	362	747	3	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009764081.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_009764082.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1U7V7H1	0.0	A0A1U7V7H1_NICSY; scarecrow-like protein 14
STRING	XP_009764081.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]