PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009763993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 348aa MW: 37180.9 Da PI: 6.9335 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 218.1 | 2e-67 | 118 | 274 | 3 | 155 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrelkskkqsalsstk 90 g++sC+dCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqq ++ +++++++++ ++++kr+re ++s+l +t+ XP_009763993.1 118 GGGISCHDCGNQAKKDCEHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQLTTLQQQQEEQQQqqtqqlhIDNNPKRQRE--DPSSSSLVCTR 210 5789**********************************************99877666655555444554333333344443..35667777888 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 + + s++ le+ ++P++vss+avf+cvr+ss dd+e+++aYqtav+igGhvfkGiLydqG+e++ XP_009763993.1 211 ILPS-STSGLEVGNFPAKVSSTAVFHCVRMSSADDAEDQFAYQTAVNIGGHVFKGILYDQGPENQ 274 7666.45689999*************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.0E-65 | 120 | 272 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 9.6E-27 | 122 | 164 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.2E-26 | 224 | 271 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MAGFFSLGGG AASSSQAQDQ QHQQSTNNPP TEISPESWFL YRNDQELPTY RGFELWQTSN 60 SQPQIRHPIN PLQDLYPTAA VGLGVGPSRS GFTMTAARPD HDPSSGGSGG LVMMRSGGGG 120 ISCHDCGNQA KKDCEHMRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQQL TTLQQQQEEQ 180 QQQQTQQLHI DNNPKRQRED PSSSSLVCTR ILPSSTSGLE VGNFPAKVSS TAVFHCVRMS 240 SADDAEDQFA YQTAVNIGGH VFKGILYDQG PENQYMAAGE SSSAGGSASH HHNLIGAAGT 300 ATSAATTSAS GGGAAAAPEA SPYLDPSLYP APINTFMAGT QFFPPPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC331912 | 0.0 | KC331912.1 Solanum lycopersicum expression of terpenoids 3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763993.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Refseq | XP_016436970.1 | 0.0 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | K4B6C9 | 1e-126 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A1S3XAL2 | 0.0 | A0A1S3XAL2_TOBAC; protein SHI RELATED SEQUENCE 1-like | ||||
TrEMBL | A0A1U7VCB3 | 0.0 | A0A1U7VCB3_NICSY; protein SHI RELATED SEQUENCE 1-like | ||||
STRING | XP_009763993.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 8e-71 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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