PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009763968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 23208.3 Da PI: 6.4769 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.6 | 1.9e-42 | 45 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la XP_009763968.1 45 PCAACKILRRRCAEKCVLAPYFPPNNPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQAQLA 139 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_009763968.1 140 KAQAE 144 99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.058 | 44 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.6E-43 | 45 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MEYSSDTKAT VISTSPSSSR SVSPPSSSSS SPNSPPPPPM VVVSPCAACK ILRRRCAEKC 60 VLAPYFPPNN PIKFTTAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN ARLRDPVYGC 120 AGAICQLQKQ VNELQAQLAK AQAEVVNMQC QQANLMALIC MDMDQSSPQA SPQQQSNLES 180 FTNNIPHSFQ NNMSFLDDNN NFGSVWEPLM WT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-43 | 44 | 152 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-43 | 44 | 152 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 3e-54 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 3e-54 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763968.1 | 1e-155 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_016480560.1 | 1e-155 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 4e-74 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1S4AVF6 | 1e-154 | A0A1S4AVF6_TOBAC; LOB domain-containing protein 1-like | ||||
TrEMBL | A0A1U7VC88 | 1e-154 | A0A1U7VC88_NICSY; LOB domain-containing protein 1-like | ||||
STRING | XP_009763968.1 | 1e-154 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-62 | LOB domain-containing protein 1 |