PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763764.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 257aa    MW: 29482.5 Da    PI: 9.9547
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763764.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.66.9e-3260149297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      fqrlw+eeDeiv+L G+id+++k+++sp+ + dafy f+k++++++v+ +ql eKirr+K+K+ ++  k       sf+k+ ++k f+ls+ iW
  XP_009763764.1  60 SFQRLWNEEDEIVILEGMIDYESKKNASPTTNYDAFYTFIKDKLQAEVNINQLKEKIRRIKRKYMNNIGK------RSFAKPREEKLFKLSQTIW 148
                     79********************************************************************......9****************** PP

          DUF573  97 g 97 
                     g
  XP_009763764.1 149 G 149
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-2861149IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MASLNLNKNQ ELMQKNAKKH PDDPLEESDK DWTLPSRSNN KKKRTTEQSA KKGASVNAKS  60
FQRLWNEEDE IVILEGMIDY ESKKNASPTT NYDAFYTFIK DKLQAEVNIN QLKEKIRRIK  120
RKYMNNIGKR SFAKPREEKL FKLSQTIWGD NIVDKEKRAA KVDDDPPKAG KMIVAKEKNS  180
LCGGNSGSSL VLHGGNAADL EDWFRRNPGL ISKEQRHEIL KKSHSMKISR AEHHLDEITL  240
MEEQVNLMTD ALKASQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763764.10.0PREDICTED: uncharacterized protein LOC104215616
RefseqXP_016488993.10.0PREDICTED: uncharacterized protein LOC107808946
TrEMBLA0A1S4BJB30.0A0A1S4BJB3_TOBAC; uncharacterized protein LOC107808946
TrEMBLA0A1U7VN250.0A0A1U7VN25_NICSY; uncharacterized protein LOC104215616
STRINGXP_009763764.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.17e-24DNA-binding storekeeper protein-related transcriptional regulator