PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763748.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 323aa    MW: 36800.4 Da    PI: 8.1721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05159178120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C k+F+r  nL+ H+
  XP_009763748.1 159 FSCHLCYKTFNRYNNLQMHM 178
                     89*****************9 PP
2zf-C2H215.84.1e-05243265123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  k + ++H +++
  XP_009763748.1 243 FMCRKCGKPFAVKGDWRTHEKNC 265
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-5152181No hitNo description
PROSITE profilePS5015710.18159186IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SuperFamilySSF576673.47E-6227263No hitNo description
Gene3DG3DSA:3.30.160.604.7E-5239263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTEPYYNFFT GWFNFLPIHQ QYLSSHNFCY NNSNNNNFQE EVPLAPPPSP PLKEALPLLK  60
NVDKLDKTNT TKYSYESTSS MAEEDNNSNE NVSVSLHIGL PISPSSDFTS SRVSFSPEGL  120
VIDESVGGNR EFDVHLSKLN KGQYWIPTPS QILIGPTQFS CHLCYKTFNR YNNLQMHMWG  180
HGSQYRKGPE SLRGTQPSAM LRLPCYCCAP DCKHNIDHPR ARPLKDFRTL QTHYKRKHGV  240
KPFMCRKCGK PFAVKGDWRT HEKNCGKIWY CICGSDFKHK RSLKDHIKSF GRGHGAVGIP  300
NLEELEDEST SEIEQDVGSS SPV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-153HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763748.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
RefseqXP_016447718.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-121ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S3Y6300.0A0A1S3Y630_TOBAC; zinc finger protein WIP2-like
TrEMBLA0A1U7VBK90.0A0A1U7VBK9_NICSY; protein TRANSPARENT TESTA 1-like
STRINGXP_009763748.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-113C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]