PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009763317.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 359aa MW: 39456.7 Da PI: 4.9823 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 146 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g XP_009763317.1 146 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 196 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.87E-31 | 146 | 204 | No hit | No description |
PROSITE profile | PS51032 | 23.63 | 147 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-30 | 147 | 204 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.5E-38 | 147 | 210 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-12 | 147 | 196 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 147 | 204 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.0E-10 | 148 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MDQQTMLSSR VKYTEHRKQT TMVKPSAPAT VTGRRKCPEM NAANGGPRVV RITVTDADAT 60 DSSSDEGEGL YGRHRVKKFV NEVRIEPCMG ETVKSGGNSN GNRSVSGVLR NGWSESAVAP 120 KRRKKNAGAT KAEATAARGL KANNVKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA 180 EEAAMVYDHA AIQLRGPDAL TNFATPPPAK TTSCSSGYNS GEESHNDQRS PKSVLRCAST 240 SFEESQNNEE AEAESLPSLP SESAQKNSDF RDENDISNFC EFPPFESLFP DDLFLFENPV 300 PILDLFEPAA LPDNIFGETC SDMFIGSSND FGFGSSSWPE DDYFQDIGDI FGSDPLMAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-19 | 146 | 203 | 4 | 62 | ATERF1 |
3gcc_A | 5e-19 | 146 | 203 | 4 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-112 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009763317.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A1U7V550 | 0.0 | A0A1U7V550_NICSY; ethylene-responsive transcription factor CRF2 | ||||
STRING | XP_009763317.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 3e-44 | cytokinin response factor 2 |