PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763275.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 331aa    MW: 37362 Da    PI: 7.944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.25.7e-4851241129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++k+++ ++++ ++i++vd++k++        + +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ 
  XP_009763275.1   5 LPPGFRFHPTDEELITYYLTNKISDFNFTA-KAIADVDLNKSKA-------SMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFR- 90 
                     79*************************999.88*******9863.......23789**************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g lvg+kktLvfy+grapkgekt+Wvmheyrle
  XP_009763275.1  91 GGVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 124
                     ********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-573144IPR003441NAC domain
PROSITE profilePS5100552.6355144IPR003441NAC domain
PfamPF023652.3E-286123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLTNKISDF NFTAKAIADV DLNKSKASMG EKEWYFFSLK  60
DRKYPTGLRT NRATEAGYWK TTGKDKEIFR GGVLVGMKKT LVFYRGRAPK GEKTNWVMHE  120
YRLETKFGFK PSKEEWVVCR VFHKSSTVKK PQPTSSSPQS EESPNCDMTY TFANELGDIE  180
SPSNFYGLAT PSNGHICNNI SLQNYTTESM MNMNLNMNLA SAATREAAIS NTLPLLPAAW  240
SSSLLCSNLP SVDSLLLRAL QFRGYNNQPR EATTSTTNNY PFIQTQNISH IGIDYNNPNL  300
AVEAPSSSMV SDPVQQQQPQ EQSYKLGSNI W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51415016171NO APICAL MERISTEM PROTEIN
1ut4_B2e-51415016171NO APICAL MERISTEM PROTEIN
1ut7_A2e-51415016171NO APICAL MERISTEM PROTEIN
1ut7_B2e-51415016171NO APICAL MERISTEM PROTEIN
4dul_A2e-51415016171NAC domain-containing protein 19
4dul_B2e-51415016171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5982214e-95KT598221.1 Solanum tuberosum cultivar Desiree NAC103 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763275.10.0PREDICTED: NAC domain-containing protein 77-like isoform X2
RefseqXP_016442161.10.0PREDICTED: NAC domain-containing protein 79-like isoform X2
TrEMBLA0A1S3XQD50.0A0A1S3XQD5_TOBAC; NAC domain-containing protein 79-like isoform X2
TrEMBLA0A1U7VN220.0A0A1U7VN22_NICSY; NAC domain-containing protein 77-like isoform X2
STRINGXP_009763274.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-88NAC domain containing protein 58