PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763274.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 338aa    MW: 38186.9 Da    PI: 7.0183
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.7e-5651311129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++k+++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ 
  XP_009763274.1   5 LPPGFRFHPTDEELITYYLTNKISDFNFTA-KAIADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFR- 97 
                     79*************************999.88***************999999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g lvg+kktLvfy+grapkgekt+Wvmheyrle
  XP_009763274.1  98 GGVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 131
                     ********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-653151IPR003441NAC domain
PROSITE profilePS5100560.1075151IPR003441NAC domain
PfamPF023659.9E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT YYLTNKISDF NFTAKAIADV DLNKCEPWDL PAKASMGEKE  60
WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGV LVGMKKTLVF YRGRAPKGEK  120
TNWVMHEYRL ETKFGFKPSK EEWVVCRVFH KSSTVKKPQP TSSSPQSEES PNCDMTYTFA  180
NELGDIESPS NFYGLATPSN GHICNNISLQ NYTTESMMNM NLNMNLASAA TREAAISNTL  240
PLLPAAWSSS LLCSNLPSVD SLLLRALQFR GYNNQPREAT TSTTNNYPFI QTQNISHIGI  300
DYNNPNLAVE APSSSMVSDP VQQQQPQEQS YKLGSNIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-57415716171NO APICAL MERISTEM PROTEIN
1ut4_B3e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_A3e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_B3e-57415716171NO APICAL MERISTEM PROTEIN
3swm_A4e-57415719174NAC domain-containing protein 19
3swm_B4e-57415719174NAC domain-containing protein 19
3swm_C4e-57415719174NAC domain-containing protein 19
3swm_D4e-57415719174NAC domain-containing protein 19
3swp_A4e-57415719174NAC domain-containing protein 19
3swp_B4e-57415719174NAC domain-containing protein 19
3swp_C4e-57415719174NAC domain-containing protein 19
3swp_D4e-57415719174NAC domain-containing protein 19
4dul_A3e-57415716171NAC domain-containing protein 19
4dul_B3e-57415716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763274.10.0PREDICTED: NAC domain-containing protein 77-like isoform X1
RefseqXP_016442160.10.0PREDICTED: NAC domain-containing protein 79-like isoform X1
TrEMBLA0A1S3XQM10.0A0A1S3XQM1_TOBAC; NAC domain-containing protein 79-like isoform X1
TrEMBLA0A1U7VLP90.0A0A1U7VLP9_NICSY; NAC domain-containing protein 77-like isoform X1
STRINGXP_009763274.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.16e-99NAC domain containing protein 58