PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763213.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 265aa    MW: 30736.5 Da    PI: 6.1028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.7e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +lv+ +   G  +W+tI++  g+ R++k+c++rw +yl
   XP_009763213.1 14 RGPWTIEEDHKLVHFILNNGIQCWRTIPKLAGLQRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.11.5e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++ E+++++++++++G++ W++Ia++++ gRt++++k++w++
   XP_009763213.1  67 RGALSEAEEDQIIELHARFGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      78889*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.041961IPR017930Myb domain
SuperFamilySSF466891.16E-2811108IPR009057Homeodomain-like
SMARTSM007176.2E-71363IPR001005SANT/Myb domain
PfamPF002492.0E-121461IPR001005SANT/Myb domain
CDDcd001671.85E-51661No hitNo description
PROSITE profilePS5129426.80662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2565117IPR009057Homeodomain-like
SMARTSM007176.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.6E-1567110IPR001005SANT/Myb domain
CDDcd001673.09E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL NNGIQCWRTI PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDQIIE LHARFGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKQVG  120
IDPLTHKPID QEKYQQEPDD TIMELNLPNH YKTETYDKSN EAENCTENAT DFSVSNNAYH  180
NMLSENFDVD LWNKSCKTMS NCYSPTLSLE AEESIKFSTV SAVTESSSNI APAEEQDSLQ  240
QWMDSIFSCA VNQLEEDLFF LRKYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763213.10.0PREDICTED: protein ODORANT1-like
RefseqXP_016498209.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U73e-74MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A1S4CB720.0A0A1S4CB72_TOBAC; protein ODORANT1-like
TrEMBLA0A1U7VA230.0A0A1U7VA23_NICSY; protein ODORANT1-like
STRINGXP_009763213.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-83myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]