PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763114.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 962aa    MW: 103613 Da    PI: 6.7138
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR482.4e-15543580340
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +k+CnCkkskClk+YC+Cfaag +C+ +C C++C+N+ 
  XP_009763114.1 543 CKRCNCKKSKCLKLYCDCFAAGIYCAGSCACQGCFNRL 580
                     79**********************************86 PP
2TCR48.51.7e-15630668139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gC+Ckks ClkkYCeC++a++ Cs+ C+Ce+CkN 
  XP_009763114.1 630 RHKRGCSCKKSMCLKKYCECYQANVGCSSGCRCEGCKNV 668
                     589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.5E-15541582IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.793542670IPR005172CRC domain
PfamPF036383.0E-11544579IPR005172CRC domain
SMARTSM011145.5E-17630671IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.0E-11632667IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MDSPEPSSKT ATINSTINPT HAEDSPVFSY ISNLSPIQPV KAAPVVQGFP GLNSPPLLFT  60
SPRVSAHSRL RRSQFPQLSS EVFSGKNEDN NNAITDSDGN GASVSQLRSE LSPSVQKVSD  120
NNISVPDESG SLIRCVDEFL VDVSNSESAN PSNSTNPSPK VADNIPQSPN SAAESVADFA  180
SKDARKDEIP KDAARVVVEQ AEEENKGKSS SDQKDNGIYN TSTDSDLPSP DLCTKIEPDL  240
PADNSLHYHC SDRQMAQLSR ADHAMLDEAS DIQTELLENA HDCRNDNDKI NSMSSAPDEC  300
IMQHDSQTKA GQYQSGIRRR CLQFEDAQRK ISPTSVGLQN ASDVVSCSIP PVSPAVIEVI  360
ASGSSNRSST ASSRPSTQLT SSSDNFGSFA VKVPKPSGIG LHLNSIAMQA GSRGSRATVS  420
VKSAERGNLS ISGKKLMSMM SCHPSENLKS CSISSNVVGS HLTIGDNDGE HESYGTNAES  480
AASLHLNAAK PLNNTVLLKP TEHTISHKRK SSSEYIDSPM NYNQSSPKKK RKKSSDAYDG  540
DGCKRCNCKK SKCLKLYCDC FAAGIYCAGS CACQGCFNRL EYEDTVNDVR QQIQSRNPLA  600
FCPKIVQHPT DSPASILGAE GASFTPPSAR HKRGCSCKKS MCLKKYCECY QANVGCSSGC  660
RCEGCKNVYG LKEEYGKDLV KKHCITERLE KPVEEKVEMV TATSGLLQID PRNQCNLTPP  720
TPSFQCSNRG KNASKSWFTS GRYLSSPESG QAIYGLSPAS PTSSKNHDID QETTGDIMDL  780
VTFDQEFNYG NAKLANEFSP GFHVTGNTDD LLALPKSQDL ASNTGGQLIP QTVHFQSTWP  840
LSWRDSPITP MNQFDGSGMN ALELLNSDKK PYAMEDDTPE ILKDSSMPQT GVKVSSPNKK  900
RISPPNRHLN ELGSSSSGGG LKTGRKFILR AVPSFPPLTP CIDSKDVATH SVDNSQKGSS  960
GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1954666814121Protein lin-54 homolog
5fd3_B3e-1954666814121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1528532KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763114.10.0PREDICTED: CRC domain-containing protein TSO1-like
TrEMBLA0A1U7VL960.0A0A1U7VL96_NICSY; CRC domain-containing protein TSO1-like
STRINGXP_009763114.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69802128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.18e-53TESMIN/TSO1-like CXC 2