PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009763090.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 457aa    MW: 52511 Da    PI: 5.1666
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009763090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.24.3e-25121432128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                     p+G rFhPtd e++ +yL   v++++l+ ++  ++ +d+y   ePw++ +   + +++++  yf ++++k+++t kr +r++ +g+Wk +gk +e
  XP_009763090.1  12 PMGHRFHPTDREVL-KYLIGFVRDEPLHSQNElMQVADLYADkEPWQIFEaydQGNNNNNTRYFITPQKKEKPTWKRVSRTVGKGTWKPQGKGRE 105
                     89**********99.9**********88766647777*997559****74232333344467********************************* PP

             NAM  92 vlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                     v++ kg+l+g  k+L +   +++++ ++ +W+m ey+l
  XP_009763090.1 106 VFDDKGRLMGYVKSLKYIpANKSSNNVNGEWLMTEYSL 143
                     ******************656888889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-288166IPR003441NAC domain
PROSITE profilePS5100528.50911166IPR003441NAC domain
PfamPF023651.9E-1212143IPR003441NAC domain
SuperFamilySSF509787.16E-9392453IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.0E-8392453IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEYSQAKCFS RPMGHRFHPT DREVLKYLIG FVRDEPLHSQ NELMQVADLY ADKEPWQIFE  60
AYDQGNNNNN TRYFITPQKK EKPTWKRVSR TVGKGTWKPQ GKGREVFDDK GRLMGYVKSL  120
KYIPANKSSN NVNGEWLMTE YSLFDRYLAA REIKNKGFVI CKIKKKGKPG DKKKGNNIDE  180
VVNDENMRDI EEFINTVLQE DVQVEDNGIR SNGTIAKLDD QENNIIQYVE GDQVRDHVLG  240
LLDSTEDIVD VNDHEEYVED CVDEGDEVQV HLLEEYIDSV LQSEDVQAED NQHATFWASA  300
EDVDLDTINF YECHDLIIKG DQANLVMSFT RLLLRIQFKG LEWGGSWSQI CSGVKAFHHN  360
LHIQPVKWEF PPSSRLKVNT DGSSNDFIRL LVIRSYHGHL SGVYCLALHP TIDILFTGGR  420
DSLSGIITEV WDIRSKMQIH ALSGHDNTVC SVFTRPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jb9_K7e-15392452239295Pre-mRNA-splicing factor prp5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-36HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755132e-36HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009763090.10.0PREDICTED: uncharacterized protein LOC104215049, partial
TrEMBLA0A1U7VMJ70.0A0A1U7VMJ7_NICSY; uncharacterized protein LOC104215049
STRINGXP_009763090.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.13e-15NAC domain containing protein 76