PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762834.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 421aa    MW: 47340.5 Da    PI: 7.1939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_009762834.1 14 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding445.1e-1467109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg ++ eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+
   XP_009762834.1  67 RGTFSLEEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.063965IPR017930Myb domain
SuperFamilySSF466892.36E-2912108IPR009057Homeodomain-like
SMARTSM007173.3E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-151461IPR001005SANT/Myb domain
CDDcd001678.65E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2465116IPR009057Homeodomain-like
SMARTSM007172.0E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.40566116IPR017930Myb domain
PfamPF002494.7E-1367109IPR001005SANT/Myb domain
CDDcd001675.25E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLINHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SLEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS EVENEEKVSV ISKNNEKASE GSSELNFFEA HENSNYGIET EKPKPSSATT  180
MDRYSNHMSA AVAPPTHVFF LNRFVNTHET STTSCNKPLD LASYLSFQQL NYSSNIGLSM  240
SPNTSNLLFN SNNSKNSEMV SHQFNSNMTT NDNILPSISN SILTSPIAAA SNNSIGTFTS  300
NGSSTSIDQL QRNSSFFDNN AFSWAAADCG KSEKEANINP SEIDPEDIKW SEYLHTQFLP  360
GNSIHNHQIT QELYSEKSGT QFATEGSLTW LQNQQQQPSL QTADLYNKHF QRIPDAFGQF  420
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762834.10.0PREDICTED: transcription factor MYB86-like
RefseqXP_016436036.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A1S3X8260.0A0A1S3X826_TOBAC; transcription factor MYB86-like
TrEMBLA0A1U7VKG20.0A0A1U7VKG2_NICSY; transcription factor MYB86-like
STRINGXP_009762834.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-106myb domain protein 61