PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009762261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 356aa MW: 39078.5 Da PI: 6.8782 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.6e-19 | 24 | 75 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a+++a++ l+g+ XP_009762261.1 24 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDQAARTLRGA 75 6799******.7*********....4456*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.60E-30 | 24 | 82 | No hit | No description |
Pfam | PF00847 | 3.3E-13 | 24 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.468 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 25 | 82 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.6E-36 | 25 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-29 | 25 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MKISAPQPSE TIRTRRKPSS RGHPRFVGVR QRPSGRWVAE IKDSLQKVRL WLGTFDTAED 60 AARAYDQAAR TLRGANARTN FELPESDSHQ GINFENAEPF NFEEACRTEE PENGLVGALK 120 AKLFNSKSSR SFIQAYASSS TSKAAIKPSV SSLENKKTLS QTGQAVTLEA EKLPKRDISH 180 NIGQGKNYCD TLFRGNHNLD YISLMSSDHQ PLISSQLWQN NQCNGGTNSA IMWANEQGRL 240 PWGEPQMSRG HGEVLFSTTS NNNINTNIFG GGNSTSCTWP MSVSVLGTSE PTVDLSTFGE 300 VDYLNVPVMM PHMNNGVTPQ AASVPTEQQM MQFENGLWSG GESAAWDPFL LSSVLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 23 | 81 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762261.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A1U7VB96 | 0.0 | A0A1U7VB96_NICSY; ethylene-responsive transcription factor CRF4-like | ||||
STRING | XP_009762261.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11869 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-19 | related to AP2 11 |