PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009762175.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18969.8 Da PI: 10.1599 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.8e-28 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKK +E+SvLCda+va+i+fs +gkl+eys+ XP_009762175.1 2 KRIENKISRQVTFSKRRLGLLKKTHEISVLCDADVALIVFSAKGKLFEYST 52 79***********************************************96 PP | |||||||
2 | K-box | 77.3 | 4.1e-26 | 87 | 154 | 18 | 85 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 qe kL ++ie Lqr++Rh++GedL+s l+e + LeqqL+++lk+iR++Kn+l++e+i+++q+k + XP_009762175.1 87 IQEKPKLMSRIELLQRNIRHYMGEDLDSFCLREFHGLEQQLDTALKRIRARKNQLMHESISQSQRKVN 154 58999************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00265 | 4.10E-34 | 1 | 69 | No hit | No description |
SMART | SM00432 | 1.7E-28 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.703 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-29 | 1 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-24 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-16 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-16 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.571 | 83 | 162 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.3E-21 | 88 | 154 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKRIENKISR QVTFSKRRLG LLKKTHEISV LCDADVALIV FSAKGKLFEY STESSMESIL 60 ERYESYSYAE RKLNANDSEP KGLSVNIQEK PKLMSRIELL QRNIRHYMGE DLDSFCLREF 120 HGLEQQLDTA LKRIRARKNQ LMHESISQSQ RKVNYIKISR GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 7e-17 | 1 | 66 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 7e-17 | 1 | 66 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 7e-17 | 1 | 66 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 7e-17 | 1 | 66 | 7 | 71 | Myocyte-specific enhancer factor 2A |
6byy_A | 8e-17 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6byy_B | 8e-17 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6byy_C | 8e-17 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6byy_D | 8e-17 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009762175.1 | 1e-116 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
Refseq | XP_009762177.1 | 1e-116 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
Swissprot | D7SMN6 | 8e-73 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A1U7VK12 | 1e-114 | A0A1U7VK12_NICSY; truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
STRING | XP_009762175.1 | 1e-115 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-65 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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