PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761897.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 333aa    MW: 36435.2 Da    PI: 9.3073
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA88.31.1e-27165219258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p++VNaKQy++Il+RR++Rak  e kk   k rkpylh SRh hA+rRpRg+gGrF
  XP_009761897.1 165 GPIFVNAKQYHGILRRRKSRAKEME-KKA-LKPRKPYLHLSRHLHAMRRPRGCGGRF 219
                     69*******************9666.555.6*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-30162222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.964163222IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-23166219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.8E-21166188IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.8E-21196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSIMHTLFSK GNEEIAENPV ATLSTTVPCW SSGLVSQSDP FGQLKSASVE HSELPKGNAT  60
EFTIFSVSPS GDWKSSGYGQ NQSNIQAAAT SANMDYRCHF ELGFGQSLIS AKYPYGGEQS  120
VGLFSAYGPQ LSVLLLSHST SFQSLELYDG LGRVMLPLNL ASDEGPIFVN AKQYHGILRR  180
RKSRAKEMEK KALKPRKPYL HLSRHLHAMR RPRGCGGRFL NTRKMNGIMK GGKTNDTVKT  240
GDVHSFYSTG SQNSEVLQSD SSNLSSPKET TGSRFCHSSE VTNMYSRGNL DPFLFQDLRP  300
SVQAIPDMMN TGHGILMAGK WVSAADSCCN LKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-16164220260HAPB protein
4g92_A4e-16164220260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897581e-176AM489758.1 Petunia x hybrida partial mRNA for YA1 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761897.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLA0A1U7V0W40.0A0A1U7V0W4_NICSY; nuclear transcription factor Y subunit A-10-like
STRINGXP_009761897.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.13e-41nuclear factor Y, subunit A2