PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761823.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 544aa    MW: 60839 Da    PI: 6.5602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.82.2e-1381755442374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++L++cA+a s+gdl  aq+l+++l++++s +g+p+qRl ay++e+L arla s+s++yk+l+++e +   s e l+++++++ev+P++kf+++
  XP_009761823.1 175 KRVLIACAKAESDGDLLTAQWLISELRQMVSVSGEPIQRLGAYILEGLVARLATSGSSIYKSLRCKEPA---SFELLSYMHILHEVCPYFKFGYM 266
                     789*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a +++d+
  XP_009761823.1 267 SANGAIAEAMKDEQRVHIIDFQISQGSQWVTLIQAFAARPGGPPHIRITGIDDSKSAyaRGGGLNIIGKRLSKLAESFKVPFEFHA-AAISTSDV 360
                     *****************************************************888899999************************.8999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+L ++pgEalaVn+++ lh+++desvs+e++rd++++lvksl+Pkvv++veqe+++n++ F+ rfle l+yy+a+f+s++a+l+r+++eri+
  XP_009761823.1 361 QLENLGIRPGEALAVNFAFVLHHMPDESVSTENHRDRLIRLVKSLNPKVVTLVEQESNTNTAAFFPRFLEMLDYYTAMFESIDATLSRAHKERIN 455
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+++ivn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+l++++ +  yr+ee++g+l+lgW++r Lv+ +aW+
  XP_009761823.1 456 VEQHCLAKDIVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNSTIKALVENYCD-KYRLEERDGALYLGWMNRDLVASCAWK 544
                     ************************************************************95.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.16148525IPR005202Transcription factor GRAS
PfamPF035147.8E-136175544IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQASQRLRRS AKSDTLYQSV QKTEASYLPQ FQTLDTQMTS INRTQGGNHS IQTYSDRYCT  60
MESSSPTGKY VVQNSISAVS FTPNGSPTSH QESQSCLSDV HYSPDTNYNS PVSGSCITDD  120
VNDFRHKLKE LETVMLGPNS DVLDSCDNSL PSCMTSPEID CWRQMMEAIP RGDLKRVLIA  180
CAKAESDGDL LTAQWLISEL RQMVSVSGEP IQRLGAYILE GLVARLATSG SSIYKSLRCK  240
EPASFELLSY MHILHEVCPY FKFGYMSANG AIAEAMKDEQ RVHIIDFQIS QGSQWVTLIQ  300
AFAARPGGPP HIRITGIDDS KSAYARGGGL NIIGKRLSKL AESFKVPFEF HAAAISTSDV  360
QLENLGIRPG EALAVNFAFV LHHMPDESVS TENHRDRLIR LVKSLNPKVV TLVEQESNTN  420
TAAFFPRFLE MLDYYTAMFE SIDATLSRAH KERINVEQHC LAKDIVNIIA CEGIERVERH  480
ELLGKWKSRF RMAGFSPYPL SSLVNSTIKA LVENYCDKYR LEERDGALYL GWMNRDLVAS  540
CAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6118154326378Protein SCARECROW
5b3h_A2e-6118154325377Protein SCARECROW
5b3h_D2e-6118154325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761823.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_009761833.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1U7V6160.0A0A1U7V616_NICSY; scarecrow-like transcription factor PAT1
STRINGXP_009761823.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]