PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009761820.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 299aa MW: 34168 Da PI: 8.7388

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009761820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.7	4.5e-53	15	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePw+L++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + XP_009761820.1 15 VPPGFRFHPTDEELLHYYLKKKLSFHKFDM-EVIREVDLNKMEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCI 108 69**************************.99**********964444222455********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + +++g++ktLvfy+grap+g+ktdW+mheyrle XP_009761820.1 109 RN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 144 9.8899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-59	14	163	IPR003441	NAC domain
PROSITE profile	PS51005	58	15	163	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	16	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MASSGGGGGG GGGGVPPGFR FHPTDEELLH YYLKKKLSFH KFDMEVIREV DLNKMEPWEL 60 QERCKIGSTP QNEWYFFSHK DRKYPTGSRT NRATNAGFWK ATGRDKCIRN TFKKIGMRKT 120 LVFYRGRAPH GQKTDWIMHE YRLEDSDENS SEDGWVICRV FKKKNLFKVI ANEGTTDTGS 180 DHLLNSSTSI HQPRTTLITH KDSPYLLQHQ QHSHDHSLNY SHIPTAVAAT FPQHEYNSHN 240 NNNIQLAQNF MSLGYNHHPH DFSSGESGLE VANVASSSMN QINNHLPLRG EMDFWSYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	15	165	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	15	165	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	15	165	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	15	165	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-53	15	165	20	170	NAC domain-containing protein 19
3swm_B	3e-53	15	165	20	170	NAC domain-containing protein 19
3swm_C	3e-53	15	165	20	170	NAC domain-containing protein 19
3swm_D	3e-53	15	165	20	170	NAC domain-containing protein 19
3swp_A	3e-53	15	165	20	170	NAC domain-containing protein 19
3swp_B	3e-53	15	165	20	170	NAC domain-containing protein 19
3swp_C	3e-53	15	165	20	170	NAC domain-containing protein 19
3swp_D	3e-53	15	165	20	170	NAC domain-containing protein 19
4dul_A	3e-53	15	165	17	167	NAC domain-containing protein 19
4dul_B	3e-53	15	165	17	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761820.1	0.0	PREDICTED: protein BEARSKIN1-like
Swissprot	Q9SV87	1e-113	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A1U7VIZ2	0.0	A0A1U7VIZ2_NICSY; protein BEARSKIN1-like
STRING	XP_009761820.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-99	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]