PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761662.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 296aa    MW: 34260.5 Da    PI: 6.4047
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1782.6e-55161421129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv ++++ + ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ 
  XP_009761662.1  16 LPPGFRFHPTDEELITHYLSPKVLDSSFCA-RAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFK- 108
                     79*************************998.89***************888999***************************************9. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++lvg+kktLvfy+grap+gek++Wvmheyrle
  XP_009761662.1 109 LKTLVGMKKTLVFYQGRAPRGEKSNWVMHEYRLE 142
                     899*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6313166IPR003441NAC domain
PROSITE profilePS5100559.40516166IPR003441NAC domain
PfamPF023653.8E-3017141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEKISGFCGD EEEMELPPGF RFHPTDEELI THYLSPKVLD SSFCARAIGE VDLNKIEPWD  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFKLK TLVGMKKTLV  120
FYQGRAPRGE KSNWVMHEYR LEGKYSVHNL PQTAKNEWVI CRIFKKSAGG KKIHISGLIK  180
NNNINDNSMS SNLPPLIDIS SYDSQITTTT TWKGETSNYS HVTCFSNSIE DQKSQTSLAD  240
DLSTNNNPYV ENFQYGDFGL MQDHSILRLL FENKESEAKQ NYDTRAYEDL DCLWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-551317214171NO APICAL MERISTEM PROTEIN
1ut4_B9e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_A9e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_B9e-551317214171NO APICAL MERISTEM PROTEIN
3swm_A9e-551317217174NAC domain-containing protein 19
3swm_B9e-551317217174NAC domain-containing protein 19
3swm_C9e-551317217174NAC domain-containing protein 19
3swm_D9e-551317217174NAC domain-containing protein 19
3swp_A9e-551317217174NAC domain-containing protein 19
3swp_B9e-551317217174NAC domain-containing protein 19
3swp_C9e-551317217174NAC domain-containing protein 19
3swp_D9e-551317217174NAC domain-containing protein 19
4dul_A9e-551317214171NAC domain-containing protein 19
4dul_B9e-551317214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098770.0AF509877.1 Petunia x hybrida nam-like protein 14 (NH14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761662.10.0PREDICTED: NAC domain-containing protein 100-like
RefseqXP_016437736.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLJ21e-119NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1S3XCT70.0A0A1S3XCT7_TOBAC; NAC domain-containing protein 92-like
TrEMBLA0A1U7V0800.0A0A1U7V080_NICSY; NAC domain-containing protein 100-like
STRINGXP_009761662.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-120NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]