PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009761662.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 34260.5 Da PI: 6.4047 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178 | 2.6e-55 | 16 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++++ + ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_009761662.1 16 LPPGFRFHPTDEELITHYLSPKVLDSSFCA-RAIGEVDLNKIEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFK- 108 79*************************998.89***************888999***************************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfy+grap+gek++Wvmheyrle XP_009761662.1 109 LKTLVGMKKTLVFYQGRAPRGEKSNWVMHEYRLE 142 899*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-63 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.405 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-30 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MEKISGFCGD EEEMELPPGF RFHPTDEELI THYLSPKVLD SSFCARAIGE VDLNKIEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFKLK TLVGMKKTLV 120 FYQGRAPRGE KSNWVMHEYR LEGKYSVHNL PQTAKNEWVI CRIFKKSAGG KKIHISGLIK 180 NNNINDNSMS SNLPPLIDIS SYDSQITTTT TWKGETSNYS HVTCFSNSIE DQKSQTSLAD 240 DLSTNNNPYV ENFQYGDFGL MQDHSILRLL FENKESEAKQ NYDTRAYEDL DCLWNY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-55 | 13 | 172 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-55 | 13 | 172 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-55 | 13 | 172 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF509877 | 0.0 | AF509877.1 Petunia x hybrida nam-like protein 14 (NH14) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009761662.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Refseq | XP_016437736.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLJ2 | 1e-119 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1S3XCT7 | 0.0 | A0A1S3XCT7_TOBAC; NAC domain-containing protein 92-like | ||||
TrEMBL | A0A1U7V080 | 0.0 | A0A1U7V080_NICSY; NAC domain-containing protein 100-like | ||||
STRING | XP_009761662.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-120 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
---|---|---|---|
|